CRISPRone

CRISPRone report for GCA_900706995.1_35891_C01

♦ Seq 1: CAADJU010000003.1 Pseudomonas aeruginosa strain NCTC11440 genome assembly, contig: ERS647586SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 6772465 bp; # of CRISPR array = 3; # of cas gene = 15  (type I, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 983282-985475 bp 2 Locus 2: 1287449-1298880 bp 3 Locus 3: 4094268-4104853 bp 4 Locus 4: 4575666-4576173 bp 5 Locus 5: 6093883-6104441 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 Zoom in on locus 4 x9 Zoom in on locus 5 x23 x11 Gene: COG1199:DinG Type: Subtype-IV-A Location: 983282-983545 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 983542-984252 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 984315-985475 bp Gene: cd09641:cas3HD Type: Type-I Location: 1287449-1289119 bp Gene: unk Type: unknown Location: 1289640-1289801 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 1290060-1290365 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 1298578-1298880 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 4094268-4095137 bp Gene: pfam00078:RT Type: other Location: 4100046-4101314 bp Gene: unk Type: unknown Location: 4101464-4101862 bp Gene: unk Type: unknown Location: 4102046-4102225 bp Gene: cls000170:cas4 Type: Type-I Location: 4103309-4104853 bp CRISPR array Location: 4575666-4576173 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 4575666-4576173 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 6093883-6095231 bp Num of repeats: 23 Spacers: s9-s30 CRISPR array Location: 6093883-6095231 bp Num of repeats: 23 Spacers: s9-s30 Gene: pfam09618:cas6f Type: Subtype-I-F Location: 6095414-6095977 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 6095981-6097009 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6097020-6098003 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6097990-6099294 bp Gene: COG1203:cas3 Type: Type-I Location: 6099352-6102582 bp Gene: cd09718:cas1 Type: universal Location: 6102579-6103553 bp CRISPR array Location: 6103814-6104441 bp Num of repeats: 11 Spacers: s31-s40 CRISPR array Location: 6103814-6104441 bp Num of repeats: 11 Spacers: s31-s40 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 4575666-4576173 bp]: array | spacers
           [Locus range 6093883-6095231 bp]: array | spacers
           [Locus range 6103814-6104441 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)