CRISPRone

CRISPRone report for GCA_900707235.1_ARA01-045

♦ Seq 1: CAADKQ010000698.1 Pseudomonas aeruginosa isolate XDR-PA genome assembly, contig: NODE_1766_length_2349_cov_29.333334, whole genome shotgun sequence

⇒Summary: seq-len = 2379 bp; # of CRISPR array = 0; # of cas gene = 4  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 92-2376 bp Zoom in on locus 1 Gene: pfam09707:cas2 Type: universal Location: 92-391 bp Gene: cd09719:cas1 Type: universal Location: 388-1278 bp Gene: pfam08798:cas6e Type: other Location: 1305-1844 bp Gene: cd09693:cas5 Type: Type-I Location: 1891-2376 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADKQ010000529.1 Pseudomonas aeruginosa isolate XDR-PA genome assembly, contig: NODE_1436_length_6949_cov_35.987194, whole genome shotgun sequence

⇒Summary: seq-len = 6979 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-6976 bp Zoom in on locus 1 x2 CRISPR array Location: 2-92 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 2-92 bp Num of repeats: 2 Spacers: s1-s1 Gene: cd09641:cas3HD Type: Type-I Location: 867-3548 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 3551-5119 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 5116-5646 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 5656-6798 bp Gene: pfam09704:cas5 Type: Type-I Location: 6800-6976 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2-92 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADKQ010000439.1 Pseudomonas aeruginosa isolate XDR-PA genome assembly, contig: NODE_1126_length_3803_cov_24.014200, whole genome shotgun sequence

⇒Summary: seq-len = 3833 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3683-3833 bp Zoom in on locus 1 x3 CRISPR array Location: 3683-3833 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 3683-3833 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3683-3833 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)