CRISPRone

CRISPRone report for GCA_900708015.1_CLM02-043

♦ Seq 1: CAADNP010000152.1 Pseudomonas aeruginosa isolate XDR-PA genome assembly, contig: NODE_204_length_26531_cov_13.912367, whole genome shotgun sequence

⇒Summary: seq-len = 26561 bp; # of CRISPR array = 0; # of cas gene = 5  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1711-7183 bp Zoom in on locus 1 Gene: cd09708:DinG Type: Subtype-IV-A Location: 1711-3885 bp Gene: mkCas0159:csf5gr6 Type: Subtype-IV-A Location: 3974-4699 bp Gene: cd09705:csf1gr8 Type: Subtype-IV-A Location: 4728-5483 bp Gene: cd09706:csf2gr7 Type: Subtype-IV-A Location: 5483-6526 bp Gene: cd09707:csf3gr5 Type: Subtype-IV-A Location: 6533-7183 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADNP010000137.1 Pseudomonas aeruginosa isolate XDR-PA genome assembly, contig: NODE_189_length_60953_cov_22.280298, whole genome shotgun sequence

⇒Summary: seq-len = 60983 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10761-17549 bp Zoom in on locus 1 Gene: cd09696:cas3 Type: Subtype-I-U Location: 10761-13982 bp Gene: pfam13280:WYL Type: other Location: 13995-14903 bp Gene: unk Type: unknown Location: 15183-16073 bp Gene: unk Type: unknown Location: 16208-16525 bp Gene: mkCas0115:csx3 Type: other Location: 16518-17549 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADNP010000707.1 Pseudomonas aeruginosa isolate XDR-PA genome assembly, contig: NODE_1655_length_640_cov_20.603125, whole genome shotgun sequence

⇒Summary: seq-len = 670 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 465-672 bp Zoom in on locus 1 x4 CRISPR array Location: 465-672 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 465-672 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 465-672 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)