CRISPRone

CRISPRone report for GCA_900708315.1_GAL04-044

♦ Seq 1: CAADOV010000159.1 Pseudomonas aeruginosa isolate XDR-PA genome assembly, contig: NODE_212_length_34955_cov_17.529680, whole genome shotgun sequence

⇒Summary: seq-len = 34985 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-89 bp Zoom in on locus 1 x2 CRISPR array Location: 0-89 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 0-89 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-89 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADOV010000195.1 Pseudomonas aeruginosa isolate XDR-PA genome assembly, contig: NODE_252_length_9320_cov_20.262016, whole genome shotgun sequence

⇒Summary: seq-len = 9350 bp; # of CRISPR array = 0; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 865-9259 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 865-3546 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 3549-5117 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 5114-5644 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 5654-6796 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 6798-7460 bp Gene: pfam08798:cas6e Type: other Location: 7435-8046 bp Gene: cd09719:cas1 Type: universal Location: 8073-8963 bp Gene: pfam09707:cas2 Type: universal Location: 8960-9259 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADOV010000523.1 Pseudomonas aeruginosa isolate XDR-PA genome assembly, contig: NODE_1062_length_3822_cov_15.453690, whole genome shotgun sequence

⇒Summary: seq-len = 3852 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-212 bp Zoom in on locus 1 x4 CRISPR array Location: 0-212 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 0-212 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-212 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)