CRISPRone

CRISPRone report for GCA_900708485.1_MAD02-006

♦ Seq 1: CAADPM010000146.1 Pseudomonas aeruginosa isolate XDR-PA genome assembly, contig: NODE_173_length_9321_cov_51.420021, whole genome shotgun sequence

⇒Summary: seq-len = 9351 bp; # of CRISPR array = 0; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 94-8487 bp Zoom in on locus 1 Gene: pfam09707:cas2 Type: universal Location: 94-393 bp Gene: cd09719:cas1 Type: universal Location: 504-1280 bp Gene: pfam08798:cas6e Type: other Location: 1307-1918 bp Gene: cd09693:cas5 Type: Type-I Location: 2018-2554 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 2556-3698 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 3708-4238 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 4235-5803 bp Gene: cd09641:cas3HD Type: Type-I Location: 5806-8487 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADPM010000325.1 Pseudomonas aeruginosa isolate XDR-PA genome assembly, contig: NODE_392_length_499_cov_45.130260, whole genome shotgun sequence

⇒Summary: seq-len = 529 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-89 bp Zoom in on locus 1 x2 CRISPR array Location: 1-89 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1-89 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-89 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)