CRISPRone

CRISPRone report for GCA_900708515.1_MAD02-013

♦ Seq 1: CAADPO010000219.1 Pseudomonas aeruginosa isolate XDR-PA genome assembly, contig: NODE_285_length_9126_cov_57.519287, whole genome shotgun sequence

⇒Summary: seq-len = 9156 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-9158 bp Zoom in on locus 1 x3 x2 CRISPR array Location: 0-147 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 0-147 bp Num of repeats: 3 Spacers: s1-s2 Gene: cd09739:cas6f Type: other Location: 330-893 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 897-1925 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 1936-2919 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2906-4207 bp Gene: COG1203:cas3 Type: Type-I Location: 4618-7848 bp Gene: cd09718:cas1 Type: universal Location: 7845-8819 bp CRISPR array Location: 9071-9158 bp Num of repeats: 2 Spacers: s3-s3 CRISPR array Location: 9071-9158 bp Num of repeats: 2 Spacers: s3-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 0-147 bp]: array | spacers
           [Locus range 9071-9158 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADPO010001104.1 Pseudomonas aeruginosa isolate XDR-PA genome assembly, contig: NODE_2077_length_1142_cov_42.804729, whole genome shotgun sequence

⇒Summary: seq-len = 1172 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 845-1173 bp Zoom in on locus 1 x6 CRISPR array Location: 845-1173 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 845-1173 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 845-1173 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)