CRISPRone

CRISPRone report for GCA_900708705.1_MAD05-027

♦ Seq 1: CAADQJ010000708.1 Pseudomonas aeruginosa isolate XDR-PA genome assembly, contig: NODE_897_length_2884_cov_31.750000, whole genome shotgun sequence

⇒Summary: seq-len = 2914 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2827-2915 bp Zoom in on locus 1 x2 CRISPR array Location: 2827-2915 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 2827-2915 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2827-2915 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADQJ010000584.1 Pseudomonas aeruginosa isolate XDR-PA genome assembly, contig: NODE_704_length_3577_cov_36.038860, whole genome shotgun sequence

⇒Summary: seq-len = 3607 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-3608 bp Zoom in on locus 1 x3 Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3-701 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 688-1671 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1682-2710 bp Gene: cd09739:cas6f Type: other Location: 2714-3277 bp CRISPR array Location: 3461-3608 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 3461-3608 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3461-3608 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADQJ010000102.1 Pseudomonas aeruginosa isolate XDR-PA genome assembly, contig: NODE_111_length_5153_cov_33.589367, whole genome shotgun sequence

⇒Summary: seq-len = 5183 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-4893 bp Zoom in on locus 1 Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2-634 bp Gene: COG1203:cas3 Type: Type-I Location: 692-3922 bp Gene: cd09718:cas1 Type: universal Location: 3919-4893 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)