CRISPRone

CRISPRone report for GCA_900744365.1_PUC47

♦ Seq 1: CAADRG010000028.1 Clostridioides difficile isolate PUC47 genome assembly, contig: PUC47_28, whole genome shotgun sequence

⇒Summary: seq-len = 31852 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30129-31086 bp Zoom in on locus 1 x15 CRISPR array Location: 30129-31086 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 30129-31086 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30129-31086 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADRG010000003.1 Clostridioides difficile isolate PUC47 genome assembly, contig: PUC47_3, whole genome shotgun sequence

⇒Summary: seq-len = 257123 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 178174-178861 bp Zoom in on locus 1 x11 CRISPR array Location: 178174-178861 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 178174-178861 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 178174-178861 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADRG010000008.1 Clostridioides difficile isolate PUC47 genome assembly, contig: PUC47_8, whole genome shotgun sequence

⇒Summary: seq-len = 166225 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112276-113100 bp Zoom in on locus 1 x13 CRISPR array Location: 112276-113100 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 112276-113100 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112276-113100 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADRG010000002.1 Clostridioides difficile isolate PUC47 genome assembly, contig: PUC47_2, whole genome shotgun sequence

⇒Summary: seq-len = 353566 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11867-11961 bp 2 Locus 2: 53582-54207 bp Zoom in on locus 1 x2 Zoom in on locus 2 x10 CRISPR array Location: 11867-11961 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 11867-11961 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 53582-54207 bp Num of repeats: 10 Spacers: s2-s10 CRISPR array Location: 53582-54207 bp Num of repeats: 10 Spacers: s2-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11867-11961 bp]: array | spacers
           [Locus range 53582-54207 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADRG010000012.1 Clostridioides difficile isolate PUC47 genome assembly, contig: PUC47_12, whole genome shotgun sequence

⇒Summary: seq-len = 141045 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16503-26812 bp Zoom in on locus 1 x25 Gene: pfam13280:WYL Type: other Location: 16503-17390 bp Gene: pfam01881:cas6 Type: other Location: 17468-18205 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 18211-20088 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 20090-21004 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 21006-21707 bp Gene: COG1203:cas3 Type: Type-I Location: 21718-24039 bp Gene: pfam01930:cas4 Type: Type-I Location: 24054-24605 bp Gene: cd09722:cas1 Type: universal Location: 24608-25588 bp Gene: cd09725:cas2 Type: universal Location: 25591-25857 bp CRISPR array Location: 26041-27659 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 26041-27659 bp Num of repeats: 25 Spacers: s1-s24 Gene: unk Type: unknown Location: 26190-26357 bp Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 26579-26812 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 26041-27659 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADRG010000006.1 Clostridioides difficile isolate PUC47 genome assembly, contig: PUC47_6, whole genome shotgun sequence

⇒Summary: seq-len = 237286 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45061-52936 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 45061-47469 bp Gene: cd09693:cas5 Type: Type-I Location: 47496-48302 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48318-49331 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 49351-50826 bp Gene: pfam01881:cas6 Type: other Location: 50831-51568 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 51827-52936 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAADRG010000001.1 Clostridioides difficile isolate PUC47 genome assembly, contig: PUC47_1, whole genome shotgun sequence

⇒Summary: seq-len = 424679 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69217-75749 bp Zoom in on locus 1 x10 CRISPR array Location: 69217-69839 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 69217-69839 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 70092-72077 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72088-73158 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 73179-74345 bp Gene: pfam01881:cas6 Type: other Location: 74347-75111 bp Gene: cd09693:cas5 Type: Type-I Location: 75102-75749 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 69217-69839 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: CAADRG010000010.1 Clostridioides difficile isolate PUC47 genome assembly, contig: PUC47_10, whole genome shotgun sequence

⇒Summary: seq-len = 148984 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23142-25652 bp 2 Locus 2: 118036-118329 bp Zoom in on locus 1 x5 x6 Zoom in on locus 2 x5 CRISPR array Location: 23142-23431 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23142-23431 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 25296-25652 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 25296-25652 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 118036-118329 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 118036-118329 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23142-23431 bp]: array | spacers
           [Locus range 25296-25652 bp]: array | spacers
           [Locus range 118036-118329 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)