CRISPRone

CRISPRone report for GCA_900744445.1_PUC51

♦ Seq 1: CAADRH010000012.1 Clostridioides difficile isolate PUC51 genome assembly, contig: PUC51_12, whole genome shotgun sequence

⇒Summary: seq-len = 141038 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113366-124548 bp Zoom in on locus 1 x25 CRISPR array Location: 113366-114983 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 113366-114983 bp Num of repeats: 25 Spacers: s1-s24 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 114212-114445 bp Gene: unk Type: unknown Location: 114667-114834 bp Gene: cd09725:cas2 Type: universal Location: 115167-115433 bp Gene: cd09722:cas1 Type: universal Location: 115436-116416 bp Gene: pfam01930:cas4 Type: Type-I Location: 116419-116937 bp Gene: COG1203:cas3 Type: Type-I Location: 116985-119306 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 119317-120018 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 120020-120934 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 120936-122813 bp Gene: pfam01881:cas6 Type: other Location: 122819-123613 bp Gene: pfam13280:WYL Type: other Location: 123634-124548 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 113366-114983 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADRH010000001.1 Clostridioides difficile isolate PUC51 genome assembly, contig: PUC51_1, whole genome shotgun sequence

⇒Summary: seq-len = 424820 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69240-75772 bp Zoom in on locus 1 x10 CRISPR array Location: 69240-69862 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 69240-69862 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 70115-72100 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72111-73181 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 73202-74368 bp Gene: pfam01881:cas6 Type: other Location: 74370-75134 bp Gene: cd09693:cas5 Type: Type-I Location: 75125-75772 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 69240-69862 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADRH010000003.1 Clostridioides difficile isolate PUC51 genome assembly, contig: PUC51_3, whole genome shotgun sequence

⇒Summary: seq-len = 355098 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13384-13478 bp 2 Locus 2: 55099-55724 bp Zoom in on locus 1 x2 Zoom in on locus 2 x10 CRISPR array Location: 13384-13478 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 13384-13478 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 55099-55724 bp Num of repeats: 10 Spacers: s2-s10 CRISPR array Location: 55099-55724 bp Num of repeats: 10 Spacers: s2-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13384-13478 bp]: array | spacers
           [Locus range 55099-55724 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADRH010000002.1 Clostridioides difficile isolate PUC51 genome assembly, contig: PUC51_2, whole genome shotgun sequence

⇒Summary: seq-len = 356002 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61334-62158 bp Zoom in on locus 1 x13 CRISPR array Location: 61334-62158 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 61334-62158 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 61334-62158 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADRH010000009.1 Clostridioides difficile isolate PUC51 genome assembly, contig: PUC51_9, whole genome shotgun sequence

⇒Summary: seq-len = 149126 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30670-30964 bp 2 Locus 2: 123347-125858 bp Zoom in on locus 1 x5 Zoom in on locus 2 x6 x5 CRISPR array Location: 30670-30964 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 30670-30964 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 123347-123704 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 123347-123704 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 125568-125858 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 125568-125858 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30670-30964 bp]: array | spacers
           [Locus range 123347-123704 bp]: array | spacers
           [Locus range 125568-125858 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADRH010000005.1 Clostridioides difficile isolate PUC51 genome assembly, contig: PUC51_5, whole genome shotgun sequence

⇒Summary: seq-len = 236460 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 183510-191385 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 183510-184619 bp Gene: pfam01881:cas6 Type: other Location: 184878-185615 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 185620-187095 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 187115-188128 bp Gene: cd09693:cas5 Type: Type-I Location: 188144-188950 bp Gene: cd09641:cas3HD Type: Type-I Location: 188977-191385 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAADRH010000004.1 Clostridioides difficile isolate PUC51 genome assembly, contig: PUC51_4, whole genome shotgun sequence

⇒Summary: seq-len = 289165 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 782-1740 bp 2 Locus 2: 210128-210815 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 CRISPR array Location: 782-1740 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 782-1740 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 210128-210815 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 210128-210815 bp Num of repeats: 11 Spacers: s15-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 782-1740 bp]: array | spacers
           [Locus range 210128-210815 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)