CRISPRone

CRISPRone report for GCA_900744495.1_PUC347

♦ Seq 1: CAADRI010000014.1 Clostridioides difficile isolate PUC347 genome assembly, contig: PUC347_14, whole genome shotgun sequence

⇒Summary: seq-len = 114264 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 111016-111642 bp Zoom in on locus 1 x10 CRISPR array Location: 111016-111642 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 111016-111642 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 111016-111642 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADRI010000001.1 Clostridioides difficile isolate PUC347 genome assembly, contig: PUC347_1, whole genome shotgun sequence

⇒Summary: seq-len = 438278 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112896-113720 bp 2 Locus 2: 422235-422329 bp Zoom in on locus 1 x13 Zoom in on locus 2 x2 CRISPR array Location: 112896-113720 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 112896-113720 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 422235-422329 bp Num of repeats: 2 Spacers: s13-s13 CRISPR array Location: 422235-422329 bp Num of repeats: 2 Spacers: s13-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112896-113720 bp]: array | spacers
           [Locus range 422235-422329 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADRI010000009.1 Clostridioides difficile isolate PUC347 genome assembly, contig: PUC347_9, whole genome shotgun sequence

⇒Summary: seq-len = 141037 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113366-124548 bp Zoom in on locus 1 x25 CRISPR array Location: 113366-114983 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 113366-114983 bp Num of repeats: 25 Spacers: s1-s24 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 114212-114445 bp Gene: unk Type: unknown Location: 114667-114834 bp Gene: cd09725:cas2 Type: universal Location: 115167-115433 bp Gene: cd09722:cas1 Type: universal Location: 115436-116416 bp Gene: pfam01930:cas4 Type: Type-I Location: 116419-116937 bp Gene: COG1203:cas3 Type: Type-I Location: 116985-119306 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 119317-120018 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 120020-120934 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 120936-122813 bp Gene: pfam01881:cas6 Type: other Location: 122819-123613 bp Gene: pfam13280:WYL Type: other Location: 123634-124548 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 113366-114983 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADRI010000002.1 Clostridioides difficile isolate PUC347 genome assembly, contig: PUC347_2, whole genome shotgun sequence

⇒Summary: seq-len = 424694 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69239-75771 bp Zoom in on locus 1 x10 CRISPR array Location: 69239-69861 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 69239-69861 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 70114-72099 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72110-73180 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 73201-74367 bp Gene: pfam01881:cas6 Type: other Location: 74369-75133 bp Gene: cd09693:cas5 Type: Type-I Location: 75124-75771 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 69239-69861 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADRI010000005.1 Clostridioides difficile isolate PUC347 genome assembly, contig: PUC347_5, whole genome shotgun sequence

⇒Summary: seq-len = 236460 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 183511-191386 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 183511-184620 bp Gene: pfam01881:cas6 Type: other Location: 184879-185616 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 185621-187096 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 187116-188129 bp Gene: cd09693:cas5 Type: Type-I Location: 188145-188951 bp Gene: cd09641:cas3HD Type: Type-I Location: 188978-191386 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADRI010000019.1 Clostridioides difficile isolate PUC347 genome assembly, contig: PUC347_19, whole genome shotgun sequence

⇒Summary: seq-len = 76118 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45156-45449 bp Zoom in on locus 1 x5 CRISPR array Location: 45156-45449 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 45156-45449 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45156-45449 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAADRI010000021.1 Clostridioides difficile isolate PUC347 genome assembly, contig: PUC347_21, whole genome shotgun sequence

⇒Summary: seq-len = 72912 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 47104-49615 bp Zoom in on locus 1 x6 x5 CRISPR array Location: 47104-47461 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 47104-47461 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 49325-49615 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 49325-49615 bp Num of repeats: 5 Spacers: s6-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 47104-47461 bp]: array | spacers
           [Locus range 49325-49615 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: CAADRI010000003.1 Clostridioides difficile isolate PUC347 genome assembly, contig: PUC347_3, whole genome shotgun sequence

⇒Summary: seq-len = 289166 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 782-1740 bp 2 Locus 2: 210127-210814 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 CRISPR array Location: 782-1740 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 782-1740 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 210127-210814 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 210127-210814 bp Num of repeats: 11 Spacers: s15-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 782-1740 bp]: array | spacers
           [Locus range 210127-210814 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)