CRISPRone

CRISPRone report for GCA_900744565.1_PUC577

♦ Seq 1: CAADRJ010000006.1 Clostridioides difficile isolate PUC577 genome assembly, contig: PUC577_6, whole genome shotgun sequence

⇒Summary: seq-len = 166319 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112440-113264 bp Zoom in on locus 1 x13 CRISPR array Location: 112440-113264 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 112440-113264 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112440-113264 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADRJ010000011.1 Clostridioides difficile isolate PUC577 genome assembly, contig: PUC577_11, whole genome shotgun sequence

⇒Summary: seq-len = 133180 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22974-23069 bp Zoom in on locus 1 x2 CRISPR array Location: 22974-23069 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 22974-23069 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 22974-23069 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADRJ010000014.1 Clostridioides difficile isolate PUC577 genome assembly, contig: PUC577_14, whole genome shotgun sequence

⇒Summary: seq-len = 121989 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45076-52951 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 45076-47484 bp Gene: cd09693:cas5 Type: Type-I Location: 47511-48317 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48333-49346 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 49366-50841 bp Gene: pfam01881:cas6 Type: other Location: 50846-51583 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 51842-52951 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADRJ010000001.1 Clostridioides difficile isolate PUC577 genome assembly, contig: PUC577_1, whole genome shotgun sequence

⇒Summary: seq-len = 366650 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69240-75772 bp Zoom in on locus 1 x10 CRISPR array Location: 69240-69862 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 69240-69862 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 70115-72100 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72111-73181 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 73202-74368 bp Gene: pfam01881:cas6 Type: other Location: 74370-75134 bp Gene: cd09693:cas5 Type: Type-I Location: 75125-75772 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 69240-69862 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADRJ010000008.1 Clostridioides difficile isolate PUC577 genome assembly, contig: PUC577_8, whole genome shotgun sequence

⇒Summary: seq-len = 148957 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16517-26826 bp Zoom in on locus 1 x25 Gene: pfam13280:WYL Type: other Location: 16517-17404 bp Gene: pfam01881:cas6 Type: other Location: 17482-18219 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 18225-20102 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 20104-21018 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 21020-21721 bp Gene: COG1203:cas3 Type: Type-I Location: 21732-24053 bp Gene: pfam01930:cas4 Type: Type-I Location: 24068-24619 bp Gene: cd09722:cas1 Type: universal Location: 24622-25602 bp Gene: cd09725:cas2 Type: universal Location: 25605-25871 bp CRISPR array Location: 26055-27673 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 26055-27673 bp Num of repeats: 25 Spacers: s1-s24 Gene: unk Type: unknown Location: 26204-26371 bp Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 26593-26826 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 26055-27673 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADRJ010000002.1 Clostridioides difficile isolate PUC577 genome assembly, contig: PUC577_2, whole genome shotgun sequence

⇒Summary: seq-len = 289167 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 782-1740 bp 2 Locus 2: 210128-210815 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 CRISPR array Location: 782-1740 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 782-1740 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 210128-210815 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 210128-210815 bp Num of repeats: 11 Spacers: s15-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 782-1740 bp]: array | spacers
           [Locus range 210128-210815 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAADRJ010000004.1 Clostridioides difficile isolate PUC577 genome assembly, contig: PUC577_4, whole genome shotgun sequence

⇒Summary: seq-len = 226652 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18564-19189 bp Zoom in on locus 1 x10 CRISPR array Location: 18564-19189 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 18564-19189 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18564-19189 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: CAADRJ010000009.1 Clostridioides difficile isolate PUC577 genome assembly, contig: PUC577_9, whole genome shotgun sequence

⇒Summary: seq-len = 146807 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28309-28603 bp 2 Locus 2: 120986-123497 bp Zoom in on locus 1 x5 Zoom in on locus 2 x6 x5 CRISPR array Location: 28309-28603 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 28309-28603 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 120986-121343 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 120986-121343 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 123207-123497 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 123207-123497 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 28309-28603 bp]: array | spacers
           [Locus range 120986-121343 bp]: array | spacers
           [Locus range 123207-123497 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)