CRISPRone

CRISPRone report for GCA_901002015.1_4880_5_7

♦ Seq 1: CAAJLM010000003.1 Clostridioides difficile strain Bel015 genome assembly, contig: ERS005836SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 170960 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10398-21351 bp 2 Locus 2: 73954-82281 bp Zoom in on locus 1 Zoom in on locus 2 Gene: cd06127:DEDDh Type: Type-I Location: 10398-10904 bp Gene: unk Type: unknown Location: 11063-11731 bp Gene: unk Type: unknown Location: 12144-12650 bp Gene: cd06127:DEDDh Type: Type-I Location: 13014-14051 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 20866-21351 bp Gene: cd09641:cas3HD Type: Type-I Location: 73954-76362 bp Gene: cd09693:cas5 Type: Type-I Location: 76389-77186 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 77202-78215 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 78234-79700 bp Gene: pfam01881:cas6 Type: other Location: 79705-80442 bp Gene: unk Type: unknown Location: 80543-80719 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 81172-82281 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJLM010000021.1 Clostridioides difficile strain Bel015 genome assembly, contig: ERS005836SCcontig000021, whole genome shotgun sequence

⇒Summary: seq-len = 62356 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 40843-52541 bp Zoom in on locus 1 x33 CRISPR array Location: 40843-42964 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 40843-42964 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 43148-43414 bp Gene: cd09722:cas1 Type: universal Location: 43417-44397 bp Gene: pfam01930:cas4 Type: Type-I Location: 44400-44918 bp Gene: COG1203:cas3 Type: Type-I Location: 44966-47287 bp Gene: cd09693:cas5 Type: Type-I Location: 47298-47999 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48001-48915 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 48917-50767 bp Gene: pfam01881:cas6 Type: other Location: 50773-51510 bp Gene: pfam13280:WYL Type: other Location: 51588-52541 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 40843-42964 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJLM010000014.1 Clostridioides difficile strain Bel015 genome assembly, contig: ERS005836SCcontig000014, whole genome shotgun sequence

⇒Summary: seq-len = 79120 bp; # of CRISPR array = 1; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29676-41921 bp Zoom in on locus 1 x43 Gene: COG0640:csa3 Type: Subtype-I-A Location: 29676-30053 bp Gene: cd09718:cas1 Type: universal Location: 30065-31720 bp CRISPR array Location: 39122-41921 bp Num of repeats: 43 Spacers: s1-s42 CRISPR array Location: 39122-41921 bp Num of repeats: 43 Spacers: s1-s42 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 39122-41921 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJLM010000043.1 Clostridioides difficile strain Bel015 genome assembly, contig: ERS005836SCcontig000043, whole genome shotgun sequence

⇒Summary: seq-len = 30575 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1602-2751 bp Zoom in on locus 1 x18 CRISPR array Location: 1602-2751 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 1602-2751 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1602-2751 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJLM010000005.1 Clostridioides difficile strain Bel015 genome assembly, contig: ERS005836SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 125576 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104138-104764 bp Zoom in on locus 1 x10 CRISPR array Location: 104138-104764 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 104138-104764 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 104138-104764 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJLM010000002.1 Clostridioides difficile strain Bel015 genome assembly, contig: ERS005836SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 195705 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7849-8662 bp 2 Locus 2: 116651-128304 bp Zoom in on locus 1 x13 Zoom in on locus 2 x40 CRISPR array Location: 7849-8662 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 7849-8662 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09725:cas2 Type: universal Location: 116651-116941 bp Gene: cd09722:cas1 Type: universal Location: 117152-118159 bp Gene: pfam01930:cas4 Type: Type-I Location: 118185-118679 bp CRISPR array Location: 118764-121362 bp Num of repeats: 40 Spacers: s13-s51 CRISPR array Location: 118764-121362 bp Num of repeats: 40 Spacers: s13-s51 Gene: unk Type: unknown Location: 119387-119515 bp Gene: cd09641:cas3HD Type: Type-I Location: 121552-124110 bp Gene: cd09693:cas5 Type: Type-I Location: 124134-124874 bp Gene: pfam05107:cas7b Type: Type-I Location: 124876-125865 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 125858-127597 bp Gene: cd09652:cas6 Type: other Location: 127609-128304 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7849-8662 bp]: array | spacers
           [Locus range 118764-121362 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)