CRISPRone

CRISPRone report for GCA_901002025.1_4880_3_8

♦ Seq 1: CAAJLL010000048.1 Clostridioides difficile strain Bel005 genome assembly, contig: ERS005825SCcontig000048, whole genome shotgun sequence

⇒Summary: seq-len = 28418 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9548-21247 bp Zoom in on locus 1 x33 Gene: pfam13280:WYL Type: other Location: 9548-10501 bp Gene: pfam01881:cas6 Type: other Location: 10579-11316 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 11322-13172 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13174-14088 bp Gene: cd09693:cas5 Type: Type-I Location: 14090-14791 bp Gene: COG1203:cas3 Type: Type-I Location: 14802-17123 bp Gene: pfam01930:cas4 Type: Type-I Location: 17138-17689 bp Gene: cd09722:cas1 Type: universal Location: 17692-18672 bp Gene: cd09725:cas2 Type: universal Location: 18675-18941 bp CRISPR array Location: 19125-21247 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 19125-21247 bp Num of repeats: 33 Spacers: s1-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19125-21247 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJLL010000009.1 Clostridioides difficile strain Bel005 genome assembly, contig: ERS005825SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 62944 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28274-36601 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 28274-30682 bp Gene: cd09693:cas5 Type: Type-I Location: 30709-31506 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 31522-32535 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 32554-34020 bp Gene: pfam01881:cas6 Type: other Location: 34025-34762 bp Gene: unk Type: unknown Location: 34863-35039 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 35492-36601 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJLL010000117.1 Clostridioides difficile strain Bel005 genome assembly, contig: ERS005825SCcontig000117, whole genome shotgun sequence

⇒Summary: seq-len = 8604 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1584-2733 bp Zoom in on locus 1 x18 CRISPR array Location: 1584-2733 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 1584-2733 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1584-2733 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJLL010000024.1 Clostridioides difficile strain Bel005 genome assembly, contig: ERS005825SCcontig000024, whole genome shotgun sequence

⇒Summary: seq-len = 45070 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23632-24258 bp Zoom in on locus 1 x10 CRISPR array Location: 23632-24258 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 23632-24258 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23632-24258 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJLL010000057.1 Clostridioides difficile strain Bel005 genome assembly, contig: ERS005825SCcontig000057, whole genome shotgun sequence

⇒Summary: seq-len = 24958 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 289-11942 bp Zoom in on locus 1 x40 Gene: cd09652:cas6 Type: other Location: 289-984 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 996-2735 bp Gene: pfam05107:cas7b Type: Type-I Location: 2728-3717 bp Gene: cd09693:cas5 Type: Type-I Location: 3719-4459 bp Gene: cd09641:cas3HD Type: Type-I Location: 4483-7041 bp CRISPR array Location: 7231-9830 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 7231-9830 bp Num of repeats: 40 Spacers: s1-s39 Gene: pfam01930:cas4 Type: Type-I Location: 9914-10408 bp Gene: cd09722:cas1 Type: universal Location: 10434-11441 bp Gene: cd09725:cas2 Type: universal Location: 11652-11942 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7231-9830 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJLL010000047.1 Clostridioides difficile strain Bel005 genome assembly, contig: ERS005825SCcontig000047, whole genome shotgun sequence

⇒Summary: seq-len = 28517 bp; # of CRISPR array = 1; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8414-20725 bp Zoom in on locus 1 x44 Gene: COG0640:csa3 Type: Subtype-I-A Location: 8414-8791 bp Gene: cd09718:cas1 Type: universal Location: 8803-10458 bp CRISPR array Location: 17860-20725 bp Num of repeats: 44 Spacers: s1-s43 CRISPR array Location: 17860-20725 bp Num of repeats: 44 Spacers: s1-s43 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 17860-20725 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJLL010000049.1 Clostridioides difficile strain Bel005 genome assembly, contig: ERS005825SCcontig000049, whole genome shotgun sequence

⇒Summary: seq-len = 28061 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15311-16124 bp Zoom in on locus 1 x13 CRISPR array Location: 15311-16124 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 15311-16124 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 15311-16124 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)