CRISPRone

CRISPRone report for GCA_901002065.1_4995_1_9

♦ Seq 1: CAAJLS010000003.1 Clostridioides difficile strain Gla009 genome assembly, contig: ERS008994SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 158861 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61992-62678 bp Zoom in on locus 1 x11 CRISPR array Location: 61992-62678 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 61992-62678 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 61992-62678 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJLS010000055.1 Clostridioides difficile strain Gla009 genome assembly, contig: ERS008994SCcontig000055, whole genome shotgun sequence

⇒Summary: seq-len = 26331 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23172-25682 bp Zoom in on locus 1 x5 x6 CRISPR array Location: 23172-23461 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23172-23461 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 25326-25682 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 25326-25682 bp Num of repeats: 6 Spacers: s5-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23172-23461 bp]: array | spacers
           [Locus range 25326-25682 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJLS010000073.1 Clostridioides difficile strain Gla009 genome assembly, contig: ERS008994SCcontig000073, whole genome shotgun sequence

⇒Summary: seq-len = 16654 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13490-13585 bp Zoom in on locus 1 x2 CRISPR array Location: 13490-13585 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 13490-13585 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13490-13585 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJLS010000010.1 Clostridioides difficile strain Gla009 genome assembly, contig: ERS008994SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 90347 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9699-20008 bp Zoom in on locus 1 x25 Gene: pfam13280:WYL Type: other Location: 9699-10586 bp Gene: pfam01881:cas6 Type: other Location: 10664-11401 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 11407-13284 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13286-14200 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 14202-14903 bp Gene: COG1203:cas3 Type: Type-I Location: 14914-17235 bp Gene: pfam01930:cas4 Type: Type-I Location: 17250-17801 bp Gene: cd09722:cas1 Type: universal Location: 17804-18784 bp Gene: cd09725:cas2 Type: universal Location: 18787-19053 bp CRISPR array Location: 19237-20855 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 19237-20855 bp Num of repeats: 25 Spacers: s1-s24 Gene: unk Type: unknown Location: 19386-19553 bp Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 19775-20008 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19237-20855 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJLS010000045.1 Clostridioides difficile strain Gla009 genome assembly, contig: ERS008994SCcontig000045, whole genome shotgun sequence

⇒Summary: seq-len = 30711 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6084-6378 bp Zoom in on locus 1 x5 CRISPR array Location: 6084-6378 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 6084-6378 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6084-6378 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJLS010000005.1 Clostridioides difficile strain Gla009 genome assembly, contig: ERS008994SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 122113 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69136-77011 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 69136-70245 bp Gene: pfam01881:cas6 Type: other Location: 70504-71241 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 71246-72721 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72741-73754 bp Gene: cd09693:cas5 Type: Type-I Location: 73770-74576 bp Gene: cd09641:cas3HD Type: Type-I Location: 74603-77011 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJLS010000075.1 Clostridioides difficile strain Gla009 genome assembly, contig: ERS008994SCcontig000075, whole genome shotgun sequence

⇒Summary: seq-len = 15780 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12240-12866 bp Zoom in on locus 1 x10 CRISPR array Location: 12240-12866 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 12240-12866 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12240-12866 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: CAAJLS010000092.1 Clostridioides difficile strain Gla009 genome assembly, contig: ERS008994SCcontig000092, whole genome shotgun sequence

⇒Summary: seq-len = 9538 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6752-7575 bp Zoom in on locus 1 x13 CRISPR array Location: 6752-7575 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 6752-7575 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6752-7575 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: CAAJLS010000008.1 Clostridioides difficile strain Gla009 genome assembly, contig: ERS008994SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 95292 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19224-25757 bp Zoom in on locus 1 x10 Gene: cd09693:cas5 Type: Type-I Location: 19224-19871 bp Gene: pfam01881:cas6 Type: other Location: 19862-20626 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 20628-21794 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 21815-22885 bp Gene: COG1203:cas3 Type: Type-I Location: 22896-24881 bp CRISPR array Location: 25134-25757 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 25134-25757 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25134-25757 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: CAAJLS010000053.1 Clostridioides difficile strain Gla009 genome assembly, contig: ERS008994SCcontig000053, whole genome shotgun sequence

⇒Summary: seq-len = 27922 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 26023-26980 bp Zoom in on locus 1 x15 CRISPR array Location: 26023-26980 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 26023-26980 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 26023-26980 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)