CRISPRone

CRISPRone report for GCA_901002075.1_4880_7_7

♦ Seq 1: CAAJMB010000049.1 Clostridioides difficile strain Lew007 genome assembly, contig: ERS007224SCcontig000049, whole genome shotgun sequence

⇒Summary: seq-len = 26538 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5891-6051 bp Zoom in on locus 1 x3 CRISPR array Location: 5891-6051 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 5891-6051 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5891-6051 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJMB010000007.1 Clostridioides difficile strain Lew007 genome assembly, contig: ERS007224SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 80370 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 604-3659 bp Zoom in on locus 1 x4 x3 CRISPR array Location: 604-831 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 604-831 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 3498-3659 bp Num of repeats: 3 Spacers: s4-s5 CRISPR array Location: 3498-3659 bp Num of repeats: 3 Spacers: s4-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 604-831 bp]: array | spacers
           [Locus range 3498-3659 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJMB010000047.1 Clostridioides difficile strain Lew007 genome assembly, contig: ERS007224SCcontig000047, whole genome shotgun sequence

⇒Summary: seq-len = 27917 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21256-21351 bp Zoom in on locus 1 x2 CRISPR array Location: 21256-21351 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 21256-21351 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 21256-21351 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJMB010000013.1 Clostridioides difficile strain Lew007 genome assembly, contig: ERS007224SCcontig000013, whole genome shotgun sequence

⇒Summary: seq-len = 58066 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3694-3919 bp Zoom in on locus 1 x4 CRISPR array Location: 3694-3919 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 3694-3919 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3694-3919 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJMB010000017.1 Clostridioides difficile strain Lew007 genome assembly, contig: ERS007224SCcontig000017, whole genome shotgun sequence

⇒Summary: seq-len = 55740 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12175-21898 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 12175-13284 bp Gene: cas14:cas14 Type: Type-V Location: 13437-14609 bp Gene: unk Type: unknown Location: 14637-15095 bp Gene: pfam01881:cas6 Type: other Location: 15409-16146 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 16151-17617 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 17637-18650 bp Gene: cd09693:cas5 Type: Type-I Location: 18666-19463 bp Gene: cd09641:cas3HD Type: Type-I Location: 19490-21898 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJMB010000037.1 Clostridioides difficile strain Lew007 genome assembly, contig: ERS007224SCcontig000037, whole genome shotgun sequence

⇒Summary: seq-len = 32934 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8776-9395 bp Zoom in on locus 1 x10 CRISPR array Location: 8776-9395 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 8776-9395 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8776-9395 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJMB010000119.1 Clostridioides difficile strain Lew007 genome assembly, contig: ERS007224SCcontig000119, whole genome shotgun sequence

⇒Summary: seq-len = 9802 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2766-3186 bp Zoom in on locus 1 x7 CRISPR array Location: 2766-3186 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 2766-3186 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2766-3186 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)