CRISPRone

CRISPRone report for GCA_901002085.1_4995_2_11

♦ Seq 1: CAAJLO010000009.1 Clostridioides difficile strain Gla022 genome assembly, contig: ERS009008SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 140995 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16438-26747 bp Zoom in on locus 1 x25 Gene: pfam13280:WYL Type: other Location: 16438-17325 bp Gene: pfam01881:cas6 Type: other Location: 17403-18140 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 18146-20023 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 20025-20939 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 20941-21642 bp Gene: COG1203:cas3 Type: Type-I Location: 21653-23974 bp Gene: pfam01930:cas4 Type: Type-I Location: 23989-24540 bp Gene: cd09722:cas1 Type: universal Location: 24543-25523 bp Gene: cd09725:cas2 Type: universal Location: 25526-25792 bp CRISPR array Location: 25976-27594 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 25976-27594 bp Num of repeats: 25 Spacers: s1-s24 Gene: unk Type: unknown Location: 26125-26292 bp Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 26514-26747 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25976-27594 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJLO010000005.1 Clostridioides difficile strain Gla022 genome assembly, contig: ERS009008SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 236337 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45108-52983 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 45108-47516 bp Gene: cd09693:cas5 Type: Type-I Location: 47543-48349 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48365-49378 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 49398-50873 bp Gene: pfam01881:cas6 Type: other Location: 50878-51615 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 51874-52983 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJLO010000001.1 Clostridioides difficile strain Gla022 genome assembly, contig: ERS009008SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 942171 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112311-113135 bp 2 Locus 2: 420913-421007 bp 3 Locus 3: 462628-463253 bp Zoom in on locus 1 x13 Zoom in on locus 2 x2 Zoom in on locus 3 x10 CRISPR array Location: 112311-113135 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 112311-113135 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 420913-421007 bp Num of repeats: 2 Spacers: s13-s13 CRISPR array Location: 420913-421007 bp Num of repeats: 2 Spacers: s13-s13 CRISPR array Location: 462628-463253 bp Num of repeats: 10 Spacers: s14-s22 CRISPR array Location: 462628-463253 bp Num of repeats: 10 Spacers: s14-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112311-113135 bp]: array | spacers
           [Locus range 420913-421007 bp]: array | spacers
           [Locus range 462628-463253 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJLO010000007.1 Clostridioides difficile strain Gla022 genome assembly, contig: ERS009008SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 149042 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23172-25682 bp 2 Locus 2: 118066-118359 bp Zoom in on locus 1 x5 x6 Zoom in on locus 2 x5 CRISPR array Location: 23172-23461 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23172-23461 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 25326-25682 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 25326-25682 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 118066-118359 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 118066-118359 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23172-23461 bp]: array | spacers
           [Locus range 25326-25682 bp]: array | spacers
           [Locus range 118066-118359 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJLO010000002.1 Clostridioides difficile strain Gla022 genome assembly, contig: ERS009008SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 425130 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69537-76069 bp Zoom in on locus 1 x10 CRISPR array Location: 69537-70159 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 69537-70159 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 70412-72397 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72408-73478 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 73499-74665 bp Gene: pfam01881:cas6 Type: other Location: 74667-75431 bp Gene: cd09693:cas5 Type: Type-I Location: 75422-76069 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 69537-70159 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJLO010000003.1 Clostridioides difficile strain Gla022 genome assembly, contig: ERS009008SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 289802 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78957-79643 bp 2 Locus 2: 288032-288989 bp Zoom in on locus 1 x11 Zoom in on locus 2 x15 CRISPR array Location: 78957-79643 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 78957-79643 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 288032-288989 bp Num of repeats: 15 Spacers: s11-s24 CRISPR array Location: 288032-288989 bp Num of repeats: 15 Spacers: s11-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78957-79643 bp]: array | spacers
           [Locus range 288032-288989 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)