CRISPRone

CRISPRone report for GCA_901002125.1_4880_5_9

♦ Seq 1: CAAJMD010000008.1 Clostridioides difficile strain Bel017 genome assembly, contig: ERS005842SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 147302 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125789-137487 bp Zoom in on locus 1 x33 CRISPR array Location: 125789-127910 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 125789-127910 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 128094-128360 bp Gene: cd09722:cas1 Type: universal Location: 128363-129343 bp Gene: pfam01930:cas4 Type: Type-I Location: 129346-129864 bp Gene: COG1203:cas3 Type: Type-I Location: 129912-132233 bp Gene: cd09693:cas5 Type: Type-I Location: 132244-132945 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 132947-133861 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 133863-135713 bp Gene: pfam01881:cas6 Type: other Location: 135719-136456 bp Gene: pfam13280:WYL Type: other Location: 136534-137487 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 125789-127910 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJMD010000002.1 Clostridioides difficile strain Bel017 genome assembly, contig: ERS005842SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 313334 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 208626-209253 bp Zoom in on locus 1 x10 CRISPR array Location: 208626-209253 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 208626-209253 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 208626-209253 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJMD010000004.1 Clostridioides difficile strain Bel017 genome assembly, contig: ERS005842SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 258846 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98284-109237 bp 2 Locus 2: 161840-170167 bp Zoom in on locus 1 Zoom in on locus 2 Gene: cd06127:DEDDh Type: Type-I Location: 98284-98790 bp Gene: unk Type: unknown Location: 98949-99617 bp Gene: unk Type: unknown Location: 100030-100536 bp Gene: cd06127:DEDDh Type: Type-I Location: 100900-101937 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 108752-109237 bp Gene: cd09641:cas3HD Type: Type-I Location: 161840-164248 bp Gene: cd09693:cas5 Type: Type-I Location: 164275-165072 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 165088-166101 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 166120-167586 bp Gene: pfam01881:cas6 Type: other Location: 167591-168328 bp Gene: unk Type: unknown Location: 168429-168605 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 169058-170167 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJMD010000001.1 Clostridioides difficile strain Bel017 genome assembly, contig: ERS005842SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 466691 bp; # of CRISPR array = 3; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 229022-241332 bp 2 Locus 2: 278835-279648 bp 3 Locus 3: 387637-399290 bp Zoom in on locus 1 x44 Zoom in on locus 2 x13 Zoom in on locus 3 x40 CRISPR array Location: 229022-231886 bp Num of repeats: 44 Spacers: s1-s43 CRISPR array Location: 229022-231886 bp Num of repeats: 44 Spacers: s1-s43 Gene: cd09718:cas1 Type: universal Location: 239288-240943 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 240955-241332 bp CRISPR array Location: 278835-279648 bp Num of repeats: 13 Spacers: s44-s55 CRISPR array Location: 278835-279648 bp Num of repeats: 13 Spacers: s44-s55 Gene: cd09725:cas2 Type: universal Location: 387637-387927 bp Gene: cd09722:cas1 Type: universal Location: 388138-389145 bp Gene: pfam01930:cas4 Type: Type-I Location: 389171-389665 bp CRISPR array Location: 389750-392348 bp Num of repeats: 40 Spacers: s56-s94 CRISPR array Location: 389750-392348 bp Num of repeats: 40 Spacers: s56-s94 Gene: unk Type: unknown Location: 390373-390501 bp Gene: cd09641:cas3HD Type: Type-I Location: 392538-395096 bp Gene: cd09693:cas5 Type: Type-I Location: 395120-395860 bp Gene: pfam05107:cas7b Type: Type-I Location: 395862-396851 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 396844-398583 bp Gene: cd09652:cas6 Type: other Location: 398595-399290 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 229022-231886 bp]: array | spacers
           [Locus range 278835-279648 bp]: array | spacers
           [Locus range 389750-392348 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJMD010000019.1 Clostridioides difficile strain Bel017 genome assembly, contig: ERS005842SCcontig000019, whole genome shotgun sequence

⇒Summary: seq-len = 76091 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73342-74490 bp Zoom in on locus 1 x18 CRISPR array Location: 73342-74490 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 73342-74490 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 73342-74490 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)