CRISPRone

CRISPRone report for GCA_901002135.1_4995_2_10

♦ Seq 1: CAAJLU010000002.1 Clostridioides difficile strain Gla021 genome assembly, contig: ERS009007SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 431990 bp; # of CRISPR array = 3; # of cas gene = 13  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 962-1920 bp 2 Locus 2: 210308-210995 bp 3 Locus 3: 286942-290955 bp 4 Locus 4: 307433-317742 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 Zoom in on locus 3 Zoom in on locus 4 x25 CRISPR array Location: 962-1920 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 962-1920 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 210308-210995 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 210308-210995 bp Num of repeats: 11 Spacers: s15-s24 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 286942-287541 bp Gene: unk Type: unknown Location: 287709-288176 bp Gene: COG2378:WYL Type: other Location: 288281-289198 bp Gene: cas14:cas14 Type: Type-V Location: 289837-290955 bp Gene: pfam13280:WYL Type: other Location: 307433-308320 bp Gene: pfam01881:cas6 Type: other Location: 308398-309135 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 309141-311018 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 311020-311934 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 311936-312637 bp Gene: COG1203:cas3 Type: Type-I Location: 312648-314969 bp Gene: pfam01930:cas4 Type: Type-I Location: 314984-315535 bp Gene: cd09722:cas1 Type: universal Location: 315538-316518 bp Gene: cd09725:cas2 Type: universal Location: 316521-316787 bp CRISPR array Location: 316971-318589 bp Num of repeats: 25 Spacers: s25-s48 CRISPR array Location: 316971-318589 bp Num of repeats: 25 Spacers: s25-s48 Gene: unk Type: unknown Location: 317120-317287 bp Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 317509-317742 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 962-1920 bp]: array | spacers
           [Locus range 210308-210995 bp]: array | spacers
           [Locus range 316971-318589 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJLU010000009.1 Clostridioides difficile strain Gla021 genome assembly, contig: ERS009007SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 149083 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23205-25715 bp 2 Locus 2: 118099-118392 bp Zoom in on locus 1 x5 x6 Zoom in on locus 2 x5 CRISPR array Location: 23205-23494 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23205-23494 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 25359-25715 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 25359-25715 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 118099-118392 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 118099-118392 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23205-23494 bp]: array | spacers
           [Locus range 25359-25715 bp]: array | spacers
           [Locus range 118099-118392 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJLU010000004.1 Clostridioides difficile strain Gla021 genome assembly, contig: ERS009007SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 236982 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45115-52990 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 45115-47523 bp Gene: cd09693:cas5 Type: Type-I Location: 47550-48356 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48372-49385 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 49405-50880 bp Gene: pfam01881:cas6 Type: other Location: 50885-51622 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 51881-52990 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJLU010000007.1 Clostridioides difficile strain Gla021 genome assembly, contig: ERS009007SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 171425 bp; # of CRISPR array = 1; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 55546-58172 bp 2 Locus 2: 117393-118217 bp Zoom in on locus 1 Zoom in on locus 2 x13 Gene: cas14:cas14 Type: Type-V Location: 55546-56007 bp Gene: unk Type: unknown Location: 56084-57628 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 57804-58172 bp CRISPR array Location: 117393-118217 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 117393-118217 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 117393-118217 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJLU010000003.1 Clostridioides difficile strain Gla021 genome assembly, contig: ERS009007SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 426246 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 349118-355651 bp Zoom in on locus 1 x10 Gene: cd09693:cas5 Type: Type-I Location: 349118-349765 bp Gene: pfam01881:cas6 Type: other Location: 349756-350520 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 350522-351688 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 351709-352779 bp Gene: COG1203:cas3 Type: Type-I Location: 352790-354775 bp CRISPR array Location: 355028-355651 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 355028-355651 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 355028-355651 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJLU010000001.1 Clostridioides difficile strain Gla021 genome assembly, contig: ERS009007SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 596369 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 254616-254710 bp 2 Locus 2: 296331-296956 bp Zoom in on locus 1 x2 Zoom in on locus 2 x10 CRISPR array Location: 254616-254710 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 254616-254710 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 296331-296956 bp Num of repeats: 10 Spacers: s2-s10 CRISPR array Location: 296331-296956 bp Num of repeats: 10 Spacers: s2-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 254616-254710 bp]: array | spacers
           [Locus range 296331-296956 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)