CRISPRone

CRISPRone report for GCA_901002485.1_4995_1_3

♦ Seq 1: CAAJNG010000004.1 Clostridioides difficile strain Gla003 genome assembly, contig: ERS008988SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 237939 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45349-53224 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 45349-47757 bp Gene: cd09693:cas5 Type: Type-I Location: 47784-48590 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48606-49619 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 49639-51114 bp Gene: pfam01881:cas6 Type: other Location: 51119-51856 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 52115-53224 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJNG010000003.1 Clostridioides difficile strain Gla003 genome assembly, contig: ERS008988SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 290084 bp; # of CRISPR array = 2; # of cas gene = 3  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-3142 bp 2 Locus 2: 79090-79776 bp 3 Locus 3: 288165-289122 bp Zoom in on locus 1 Zoom in on locus 2 x11 Zoom in on locus 3 x15 Gene: cas14:cas14 Type: Type-V Location: 2-247 bp Gene: COG2378:WYL Type: other Location: 886-1797 bp Gene: unk Type: unknown Location: 1908-2375 bp Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 2543-3142 bp CRISPR array Location: 79090-79776 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 79090-79776 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 288165-289122 bp Num of repeats: 15 Spacers: s11-s24 CRISPR array Location: 288165-289122 bp Num of repeats: 15 Spacers: s11-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 79090-79776 bp]: array | spacers
           [Locus range 288165-289122 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJNG010000001.1 Clostridioides difficile strain Gla003 genome assembly, contig: ERS008988SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 596350 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 254598-254692 bp 2 Locus 2: 296313-296938 bp Zoom in on locus 1 x2 Zoom in on locus 2 x10 CRISPR array Location: 254598-254692 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 254598-254692 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 296313-296938 bp Num of repeats: 10 Spacers: s2-s10 CRISPR array Location: 296313-296938 bp Num of repeats: 10 Spacers: s2-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 254598-254692 bp]: array | spacers
           [Locus range 296313-296938 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJNG010000002.1 Clostridioides difficile strain Gla003 genome assembly, contig: ERS008988SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 456970 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 379842-386375 bp Zoom in on locus 1 x10 Gene: cd09693:cas5 Type: Type-I Location: 379842-380489 bp Gene: pfam01881:cas6 Type: other Location: 380480-381244 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 381246-382412 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 382433-383503 bp Gene: COG1203:cas3 Type: Type-I Location: 383514-385499 bp CRISPR array Location: 385752-386375 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 385752-386375 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 385752-386375 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJNG010000007.1 Clostridioides difficile strain Gla003 genome assembly, contig: ERS008988SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 168397 bp; # of CRISPR array = 1; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53240-54063 bp 2 Locus 2: 113284-117369 bp Zoom in on locus 1 x13 Zoom in on locus 2 CRISPR array Location: 53240-54063 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 53240-54063 bp Num of repeats: 13 Spacers: s1-s12 Gene: COG0640:csa3 Type: Subtype-I-A Location: 113284-113652 bp Gene: unk Type: unknown Location: 113828-115351 bp Gene: cas14:cas14 Type: Type-V Location: 115762-117369 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 53240-54063 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJNG010000010.1 Clostridioides difficile strain Gla003 genome assembly, contig: ERS008988SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 141139 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113436-124618 bp Zoom in on locus 1 x25 CRISPR array Location: 113436-115053 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 113436-115053 bp Num of repeats: 25 Spacers: s1-s24 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 114282-114515 bp Gene: unk Type: unknown Location: 114737-114904 bp Gene: cd09725:cas2 Type: universal Location: 115237-115503 bp Gene: cd09722:cas1 Type: universal Location: 115506-116486 bp Gene: pfam01930:cas4 Type: Type-I Location: 116489-117007 bp Gene: COG1203:cas3 Type: Type-I Location: 117055-119376 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 119387-120088 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 120090-121004 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 121006-122883 bp Gene: pfam01881:cas6 Type: other Location: 122889-123683 bp Gene: pfam13280:WYL Type: other Location: 123704-124618 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 113436-115053 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJNG010000008.1 Clostridioides difficile strain Gla003 genome assembly, contig: ERS008988SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 149083 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23205-25715 bp 2 Locus 2: 118099-118392 bp Zoom in on locus 1 x5 x6 Zoom in on locus 2 x5 CRISPR array Location: 23205-23494 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23205-23494 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 25359-25715 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 25359-25715 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 118099-118392 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 118099-118392 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23205-23494 bp]: array | spacers
           [Locus range 25359-25715 bp]: array | spacers
           [Locus range 118099-118392 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)