CRISPRone

CRISPRone report for GCA_901002505.1_4995_1_5

♦ Seq 1: CAAJNI010000007.1 Clostridioides difficile strain Gla005 genome assembly, contig: ERS008990SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 174217 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45112-52987 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 45112-47520 bp Gene: cd09693:cas5 Type: Type-I Location: 47547-48353 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48369-49382 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 49402-50877 bp Gene: pfam01881:cas6 Type: other Location: 50882-51619 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 51878-52987 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJNI010000019.1 Clostridioides difficile strain Gla005 genome assembly, contig: ERS008990SCcontig000019, whole genome shotgun sequence

⇒Summary: seq-len = 93834 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 68127-70638 bp Zoom in on locus 1 x6 x5 CRISPR array Location: 68127-68484 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 68127-68484 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 70348-70638 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 70348-70638 bp Num of repeats: 5 Spacers: s6-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 68127-68484 bp]: array | spacers
           [Locus range 70348-70638 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJNI010000026.1 Clostridioides difficile strain Gla005 genome assembly, contig: ERS008990SCcontig000026, whole genome shotgun sequence

⇒Summary: seq-len = 55312 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24328-24621 bp Zoom in on locus 1 x5 CRISPR array Location: 24328-24621 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 24328-24621 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 24328-24621 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJNI010000010.1 Clostridioides difficile strain Gla005 genome assembly, contig: ERS008990SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 141485 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113403-124585 bp Zoom in on locus 1 x25 CRISPR array Location: 113403-115020 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 113403-115020 bp Num of repeats: 25 Spacers: s1-s24 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 114249-114482 bp Gene: unk Type: unknown Location: 114704-114871 bp Gene: cd09725:cas2 Type: universal Location: 115204-115470 bp Gene: cd09722:cas1 Type: universal Location: 115473-116453 bp Gene: pfam01930:cas4 Type: Type-I Location: 116456-116974 bp Gene: COG1203:cas3 Type: Type-I Location: 117022-119343 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 119354-120055 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 120057-120971 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 120973-122850 bp Gene: pfam01881:cas6 Type: other Location: 122856-123650 bp Gene: pfam13280:WYL Type: other Location: 123671-124585 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 113403-115020 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJNI010000006.1 Clostridioides difficile strain Gla005 genome assembly, contig: ERS008990SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 182511 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 145290-151822 bp Zoom in on locus 1 x10 CRISPR array Location: 145290-145912 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 145290-145912 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 146165-148150 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 148161-149231 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 149252-150418 bp Gene: pfam01881:cas6 Type: other Location: 150420-151184 bp Gene: cd09693:cas5 Type: Type-I Location: 151175-151822 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 145290-145912 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJNI010000001.1 Clostridioides difficile strain Gla005 genome assembly, contig: ERS008990SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 327407 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25698-26323 bp Zoom in on locus 1 x10 CRISPR array Location: 25698-26323 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 25698-26323 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 25698-26323 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJNI010000009.1 Clostridioides difficile strain Gla005 genome assembly, contig: ERS008990SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 166641 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53171-53994 bp Zoom in on locus 1 x13 CRISPR array Location: 53171-53994 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 53171-53994 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 53171-53994 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: CAAJNI010000004.1 Clostridioides difficile strain Gla005 genome assembly, contig: ERS008990SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 268191 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 254603-254697 bp Zoom in on locus 1 x2 CRISPR array Location: 254603-254697 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 254603-254697 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 254603-254697 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: CAAJNI010000003.1 Clostridioides difficile strain Gla005 genome assembly, contig: ERS008990SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 276339 bp; # of CRISPR array = 1; # of cas gene = 4  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16413-21320 bp 2 Locus 2: 97268-97954 bp Zoom in on locus 1 Zoom in on locus 2 x11 Gene: cas14:cas14 Type: Type-V Location: 16413-17531 bp Gene: cas14:cas14 Type: Type-V Location: 17892-18425 bp Gene: COG2378:WYL Type: other Location: 19064-19975 bp Gene: unk Type: unknown Location: 20086-20553 bp Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 20721-21320 bp CRISPR array Location: 97268-97954 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 97268-97954 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 97268-97954 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: CAAJNI010000032.1 Clostridioides difficile strain Gla005 genome assembly, contig: ERS008990SCcontig000032, whole genome shotgun sequence

⇒Summary: seq-len = 31985 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30070-31027 bp Zoom in on locus 1 x15 CRISPR array Location: 30070-31027 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 30070-31027 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30070-31027 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)