CRISPRone

CRISPRone report for GCA_901002525.1_4880_3_5

♦ Seq 1: CAAJNR010000027.1 Clostridioides difficile strain Bel002 genome assembly, contig: ERS005823SCcontig000027, whole genome shotgun sequence

⇒Summary: seq-len = 62368 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 40855-52553 bp Zoom in on locus 1 x33 CRISPR array Location: 40855-42976 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 40855-42976 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 43160-43426 bp Gene: cd09722:cas1 Type: universal Location: 43429-44409 bp Gene: pfam01930:cas4 Type: Type-I Location: 44412-44930 bp Gene: COG1203:cas3 Type: Type-I Location: 44978-47299 bp Gene: cd09693:cas5 Type: Type-I Location: 47310-48011 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48013-48927 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 48929-50779 bp Gene: pfam01881:cas6 Type: other Location: 50785-51522 bp Gene: pfam13280:WYL Type: other Location: 51600-52553 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 40855-42976 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJNR010000022.1 Clostridioides difficile strain Bel002 genome assembly, contig: ERS005823SCcontig000022, whole genome shotgun sequence

⇒Summary: seq-len = 76062 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73313-74461 bp Zoom in on locus 1 x18 CRISPR array Location: 73313-74461 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 73313-74461 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 73313-74461 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJNR010000002.1 Clostridioides difficile strain Bel002 genome assembly, contig: ERS005823SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 213032 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45830-46644 bp 2 Locus 2: 84146-96457 bp Zoom in on locus 1 x13 Zoom in on locus 2 x44 CRISPR array Location: 45830-46644 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 45830-46644 bp Num of repeats: 13 Spacers: s1-s12 Gene: COG0640:csa3 Type: Subtype-I-A Location: 84146-84523 bp Gene: cd09718:cas1 Type: universal Location: 84535-86190 bp CRISPR array Location: 93592-96457 bp Num of repeats: 44 Spacers: s13-s55 CRISPR array Location: 93592-96457 bp Num of repeats: 44 Spacers: s13-s55 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 45830-46644 bp]: array | spacers
           [Locus range 93592-96457 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJNR010000012.1 Clostridioides difficile strain Bel002 genome assembly, contig: ERS005823SCcontig000012, whole genome shotgun sequence

⇒Summary: seq-len = 125543 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104138-104764 bp Zoom in on locus 1 x10 CRISPR array Location: 104138-104764 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 104138-104764 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 104138-104764 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJNR010000001.1 Clostridioides difficile strain Bel002 genome assembly, contig: ERS005823SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 258454 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97885-108838 bp 2 Locus 2: 161441-169768 bp Zoom in on locus 1 Zoom in on locus 2 Gene: cd06127:DEDDh Type: Type-I Location: 97885-98391 bp Gene: unk Type: unknown Location: 98550-99218 bp Gene: unk Type: unknown Location: 99631-100137 bp Gene: cd06127:DEDDh Type: Type-I Location: 100501-101538 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 108353-108838 bp Gene: cd09641:cas3HD Type: Type-I Location: 161441-163849 bp Gene: cd09693:cas5 Type: Type-I Location: 163876-164673 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 164689-165702 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 165721-167187 bp Gene: pfam01881:cas6 Type: other Location: 167192-167929 bp Gene: unk Type: unknown Location: 168030-168206 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 168659-169768 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJNR010000008.1 Clostridioides difficile strain Bel002 genome assembly, contig: ERS005823SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 141030 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 67409-79062 bp Zoom in on locus 1 x40 Gene: cd09652:cas6 Type: other Location: 67409-68104 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 68116-69855 bp Gene: pfam05107:cas7b Type: Type-I Location: 69848-70837 bp Gene: cd09693:cas5 Type: Type-I Location: 70839-71579 bp Gene: cd09641:cas3HD Type: Type-I Location: 71603-74161 bp CRISPR array Location: 74351-76950 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 74351-76950 bp Num of repeats: 40 Spacers: s1-s39 Gene: pfam01930:cas4 Type: Type-I Location: 77034-77528 bp Gene: cd09722:cas1 Type: universal Location: 77554-78561 bp Gene: cd09725:cas2 Type: universal Location: 78772-79062 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 74351-76950 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)