CRISPRone

CRISPRone report for GCA_901002545.1_4995_2_5

♦ Seq 1: CAAJNL010000016.1 Clostridioides difficile strain Gla016 genome assembly, contig: ERS009002SCcontig000016, whole genome shotgun sequence

⇒Summary: seq-len = 107446 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30610-37143 bp Zoom in on locus 1 x10 Gene: cd09693:cas5 Type: Type-I Location: 30610-31257 bp Gene: pfam01881:cas6 Type: other Location: 31248-32012 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 32014-33180 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 33201-34271 bp Gene: COG1203:cas3 Type: Type-I Location: 34282-36267 bp CRISPR array Location: 36520-37143 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 36520-37143 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36520-37143 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJNL010000004.1 Clostridioides difficile strain Gla016 genome assembly, contig: ERS009002SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 236894 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45100-52975 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 45100-47508 bp Gene: cd09693:cas5 Type: Type-I Location: 47535-48341 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48357-49370 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 49390-50865 bp Gene: pfam01881:cas6 Type: other Location: 50870-51607 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 51866-52975 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJNL010000007.1 Clostridioides difficile strain Gla016 genome assembly, contig: ERS009002SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 141511 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16928-27237 bp Zoom in on locus 1 x25 Gene: pfam13280:WYL Type: other Location: 16928-17815 bp Gene: pfam01881:cas6 Type: other Location: 17893-18630 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 18636-20513 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 20515-21429 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 21431-22132 bp Gene: COG1203:cas3 Type: Type-I Location: 22143-24464 bp Gene: pfam01930:cas4 Type: Type-I Location: 24479-25030 bp Gene: cd09722:cas1 Type: universal Location: 25033-26013 bp Gene: cd09725:cas2 Type: universal Location: 26016-26282 bp CRISPR array Location: 26466-28084 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 26466-28084 bp Num of repeats: 25 Spacers: s1-s24 Gene: unk Type: unknown Location: 26615-26782 bp Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 27004-27237 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 26466-28084 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJNL010000001.1 Clostridioides difficile strain Gla016 genome assembly, contig: ERS009002SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 489513 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 254630-254724 bp 2 Locus 2: 296345-296970 bp Zoom in on locus 1 x2 Zoom in on locus 2 x10 CRISPR array Location: 254630-254724 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 254630-254724 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 296345-296970 bp Num of repeats: 10 Spacers: s2-s10 CRISPR array Location: 296345-296970 bp Num of repeats: 10 Spacers: s2-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 254630-254724 bp]: array | spacers
           [Locus range 296345-296970 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJNL010000003.1 Clostridioides difficile strain Gla016 genome assembly, contig: ERS009002SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 289269 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 951-1909 bp 2 Locus 2: 210297-210984 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 CRISPR array Location: 951-1909 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 951-1909 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 210297-210984 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 210297-210984 bp Num of repeats: 11 Spacers: s15-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 951-1909 bp]: array | spacers
           [Locus range 210297-210984 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJNL010000006.1 Clostridioides difficile strain Gla016 genome assembly, contig: ERS009002SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 149050 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30692-30986 bp 2 Locus 2: 123369-125880 bp Zoom in on locus 1 x5 Zoom in on locus 2 x6 x5 CRISPR array Location: 30692-30986 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 30692-30986 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 123369-123726 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 123369-123726 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 125590-125880 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 125590-125880 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30692-30986 bp]: array | spacers
           [Locus range 123369-123726 bp]: array | spacers
           [Locus range 125590-125880 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJNL010000022.1 Clostridioides difficile strain Gla016 genome assembly, contig: ERS009002SCcontig000022, whole genome shotgun sequence

⇒Summary: seq-len = 73644 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19638-20462 bp Zoom in on locus 1 x13 CRISPR array Location: 19638-20462 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 19638-20462 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19638-20462 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)