CRISPRone

CRISPRone report for GCA_901002555.1_4995_2_3

♦ Seq 1: CAAJNQ010000045.1 Clostridioides difficile strain Gla014 genome assembly, contig: ERS009000SCcontig000045, whole genome shotgun sequence

⇒Summary: seq-len = 31934 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30044-31001 bp Zoom in on locus 1 x15 CRISPR array Location: 30044-31001 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 30044-31001 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30044-31001 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJNQ010000011.1 Clostridioides difficile strain Gla014 genome assembly, contig: ERS009000SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 106860 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69710-76242 bp Zoom in on locus 1 x10 CRISPR array Location: 69710-70332 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 69710-70332 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 70585-72570 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72581-73651 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 73672-74838 bp Gene: pfam01881:cas6 Type: other Location: 74840-75604 bp Gene: cd09693:cas5 Type: Type-I Location: 75595-76242 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 69710-70332 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJNQ010000015.1 Clostridioides difficile strain Gla014 genome assembly, contig: ERS009000SCcontig000015, whole genome shotgun sequence

⇒Summary: seq-len = 93766 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23198-25708 bp Zoom in on locus 1 x5 x6 CRISPR array Location: 23198-23487 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23198-23487 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 25352-25708 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 25352-25708 bp Num of repeats: 6 Spacers: s5-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23198-23487 bp]: array | spacers
           [Locus range 25352-25708 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJNQ010000026.1 Clostridioides difficile strain Gla014 genome assembly, contig: ERS009000SCcontig000026, whole genome shotgun sequence

⇒Summary: seq-len = 63069 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5347-5972 bp Zoom in on locus 1 x10 CRISPR array Location: 5347-5972 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 5347-5972 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5347-5972 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJNQ010000001.1 Clostridioides difficile strain Gla014 genome assembly, contig: ERS009000SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 175933 bp; # of CRISPR array = 1; # of cas gene = 3  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 96158-96845 bp 2 Locus 2: 172792-175932 bp Zoom in on locus 1 x11 Zoom in on locus 2 CRISPR array Location: 96158-96845 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 96158-96845 bp Num of repeats: 11 Spacers: s1-s10 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 172792-173391 bp Gene: unk Type: unknown Location: 173559-174026 bp Gene: COG2378:WYL Type: other Location: 174131-175048 bp Gene: cas14:cas14 Type: Type-V Location: 175687-175932 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 96158-96845 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJNQ010000030.1 Clostridioides difficile strain Gla014 genome assembly, contig: ERS009000SCcontig000030, whole genome shotgun sequence

⇒Summary: seq-len = 55325 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24341-24634 bp Zoom in on locus 1 x5 CRISPR array Location: 24341-24634 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 24341-24634 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 24341-24634 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJNQ010000006.1 Clostridioides difficile strain Gla014 genome assembly, contig: ERS009000SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 116365 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9683-19992 bp Zoom in on locus 1 x25 Gene: pfam13280:WYL Type: other Location: 9683-10570 bp Gene: pfam01881:cas6 Type: other Location: 10648-11385 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 11391-13268 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13270-14184 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 14186-14887 bp Gene: COG1203:cas3 Type: Type-I Location: 14898-17219 bp Gene: pfam01930:cas4 Type: Type-I Location: 17234-17785 bp Gene: cd09722:cas1 Type: universal Location: 17788-18768 bp Gene: cd09725:cas2 Type: universal Location: 18771-19037 bp CRISPR array Location: 19221-20839 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 19221-20839 bp Num of repeats: 25 Spacers: s1-s24 Gene: unk Type: unknown Location: 19370-19537 bp Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 19759-19992 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19221-20839 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: CAAJNQ010000022.1 Clostridioides difficile strain Gla014 genome assembly, contig: ERS009000SCcontig000022, whole genome shotgun sequence

⇒Summary: seq-len = 73593 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53172-53995 bp Zoom in on locus 1 x13 CRISPR array Location: 53172-53995 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 53172-53995 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 53172-53995 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: CAAJNQ010000005.1 Clostridioides difficile strain Gla014 genome assembly, contig: ERS009000SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 122097 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69135-77010 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 69135-70244 bp Gene: pfam01881:cas6 Type: other Location: 70503-71240 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 71245-72720 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72740-73753 bp Gene: cd09693:cas5 Type: Type-I Location: 73769-74575 bp Gene: cd09641:cas3HD Type: Type-I Location: 74602-77010 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: CAAJNQ010000063.1 Clostridioides difficile strain Gla014 genome assembly, contig: ERS009000SCcontig000063, whole genome shotgun sequence

⇒Summary: seq-len = 15593 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2016-2110 bp Zoom in on locus 1 x2 CRISPR array Location: 2016-2110 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 2016-2110 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2016-2110 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)