CRISPRone

CRISPRone report for GCA_901002585.1_4880_3_7

♦ Seq 1: CAAJNT010000019.1 Clostridioides difficile strain Bel004 genome assembly, contig: ERS005829SCcontig000019, whole genome shotgun sequence

⇒Summary: seq-len = 75991 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73242-74390 bp Zoom in on locus 1 x18 CRISPR array Location: 73242-74390 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 73242-74390 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 73242-74390 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJNT010000003.1 Clostridioides difficile strain Bel004 genome assembly, contig: ERS005829SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 140972 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 67402-79055 bp Zoom in on locus 1 x40 Gene: cd09652:cas6 Type: other Location: 67402-68097 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 68109-69848 bp Gene: pfam05107:cas7b Type: Type-I Location: 69841-70830 bp Gene: cd09693:cas5 Type: Type-I Location: 70832-71572 bp Gene: cd09641:cas3HD Type: Type-I Location: 71596-74154 bp CRISPR array Location: 74344-76943 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 74344-76943 bp Num of repeats: 40 Spacers: s1-s39 Gene: pfam01930:cas4 Type: Type-I Location: 77027-77521 bp Gene: cd09722:cas1 Type: universal Location: 77547-78554 bp Gene: cd09725:cas2 Type: universal Location: 78765-79055 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 74344-76943 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJNT010000007.1 Clostridioides difficile strain Bel004 genome assembly, contig: ERS005829SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 125611 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104173-104799 bp Zoom in on locus 1 x10 CRISPR array Location: 104173-104799 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 104173-104799 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 104173-104799 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJNT010000017.1 Clostridioides difficile strain Bel004 genome assembly, contig: ERS005829SCcontig000017, whole genome shotgun sequence

⇒Summary: seq-len = 79257 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20675-29002 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 20675-23083 bp Gene: cd09693:cas5 Type: Type-I Location: 23110-23907 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 23923-24936 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 24955-26421 bp Gene: pfam01881:cas6 Type: other Location: 26426-27163 bp Gene: unk Type: unknown Location: 27264-27440 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 27893-29002 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJNT010000009.1 Clostridioides difficile strain Bel004 genome assembly, contig: ERS005829SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 112804 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16349-28659 bp 2 Locus 2: 66162-66975 bp Zoom in on locus 1 x44 Zoom in on locus 2 x13 CRISPR array Location: 16349-19213 bp Num of repeats: 44 Spacers: s1-s43 CRISPR array Location: 16349-19213 bp Num of repeats: 44 Spacers: s1-s43 Gene: cd09718:cas1 Type: universal Location: 26615-28270 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 28282-28659 bp CRISPR array Location: 66162-66975 bp Num of repeats: 13 Spacers: s44-s55 CRISPR array Location: 66162-66975 bp Num of repeats: 13 Spacers: s44-s55 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 16349-19213 bp]: array | spacers
           [Locus range 66162-66975 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJNT010000028.1 Clostridioides difficile strain Bel004 genome assembly, contig: ERS005829SCcontig000028, whole genome shotgun sequence

⇒Summary: seq-len = 62346 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9816-21515 bp Zoom in on locus 1 x33 Gene: pfam13280:WYL Type: other Location: 9816-10769 bp Gene: pfam01881:cas6 Type: other Location: 10847-11584 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 11590-13440 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13442-14356 bp Gene: cd09693:cas5 Type: Type-I Location: 14358-15059 bp Gene: COG1203:cas3 Type: Type-I Location: 15070-17391 bp Gene: pfam01930:cas4 Type: Type-I Location: 17406-17957 bp Gene: cd09722:cas1 Type: universal Location: 17960-18940 bp Gene: cd09725:cas2 Type: universal Location: 18943-19209 bp CRISPR array Location: 19393-21515 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 19393-21515 bp Num of repeats: 33 Spacers: s1-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19393-21515 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJNT010000006.1 Clostridioides difficile strain Bel004 genome assembly, contig: ERS005829SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 129929 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 94634-105587 bp Zoom in on locus 1 Gene: cd06127:DEDDh Type: Type-I Location: 94634-95140 bp Gene: unk Type: unknown Location: 95299-95967 bp Gene: unk Type: unknown Location: 96380-96886 bp Gene: cd06127:DEDDh Type: Type-I Location: 97250-98287 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 105102-105587 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)