CRISPRone

CRISPRone report for GCA_901002595.1_4880_7_11

♦ Seq 1: CAAJNV010000024.1 Clostridioides difficile strain Lew011 genome assembly, contig: ERS007228SCcontig000024, whole genome shotgun sequence

⇒Summary: seq-len = 60510 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 57065-57691 bp Zoom in on locus 1 x10 CRISPR array Location: 57065-57691 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 57065-57691 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 57065-57691 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJNV010000064.1 Clostridioides difficile strain Lew011 genome assembly, contig: ERS007228SCcontig000064, whole genome shotgun sequence

⇒Summary: seq-len = 18798 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5223-5317 bp Zoom in on locus 1 x2 CRISPR array Location: 5223-5317 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 5223-5317 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5223-5317 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJNV010000032.1 Clostridioides difficile strain Lew011 genome assembly, contig: ERS007228SCcontig000032, whole genome shotgun sequence

⇒Summary: seq-len = 51507 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45201-45494 bp Zoom in on locus 1 x5 CRISPR array Location: 45201-45494 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 45201-45494 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45201-45494 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJNV010000001.1 Clostridioides difficile strain Lew011 genome assembly, contig: ERS007228SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 183301 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 27390-35265 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 27390-28499 bp Gene: pfam01881:cas6 Type: other Location: 28758-29495 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 29500-30975 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 30995-32008 bp Gene: cd09693:cas5 Type: Type-I Location: 32024-32830 bp Gene: cd09641:cas3HD Type: Type-I Location: 32857-35265 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJNV010000044.1 Clostridioides difficile strain Lew011 genome assembly, contig: ERS007228SCcontig000044, whole genome shotgun sequence

⇒Summary: seq-len = 37205 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9729-20038 bp Zoom in on locus 1 x25 Gene: pfam13280:WYL Type: other Location: 9729-10616 bp Gene: pfam01881:cas6 Type: other Location: 10694-11431 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 11437-13314 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13316-14230 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 14232-14933 bp Gene: COG1203:cas3 Type: Type-I Location: 14944-17265 bp Gene: pfam01930:cas4 Type: Type-I Location: 17280-17831 bp Gene: cd09722:cas1 Type: universal Location: 17834-18814 bp Gene: cd09725:cas2 Type: universal Location: 18817-19083 bp CRISPR array Location: 19267-20885 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 19267-20885 bp Num of repeats: 25 Spacers: s1-s24 Gene: unk Type: unknown Location: 19416-19583 bp Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 19805-20038 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19267-20885 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJNV010000051.1 Clostridioides difficile strain Lew011 genome assembly, contig: ERS007228SCcontig000051, whole genome shotgun sequence

⇒Summary: seq-len = 28823 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19185-25718 bp Zoom in on locus 1 x10 Gene: cd09693:cas5 Type: Type-I Location: 19185-19832 bp Gene: pfam01881:cas6 Type: other Location: 19823-20587 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 20589-21755 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 21776-22846 bp Gene: COG1203:cas3 Type: Type-I Location: 22857-24842 bp CRISPR array Location: 25095-25718 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 25095-25718 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25095-25718 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJNV010000031.1 Clostridioides difficile strain Lew011 genome assembly, contig: ERS007228SCcontig000031, whole genome shotgun sequence

⇒Summary: seq-len = 51726 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31324-32147 bp Zoom in on locus 1 x13 CRISPR array Location: 31324-32147 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 31324-32147 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 31324-32147 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: CAAJNV010000019.1 Clostridioides difficile strain Lew011 genome assembly, contig: ERS007228SCcontig000019, whole genome shotgun sequence

⇒Summary: seq-len = 70488 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44781-47292 bp Zoom in on locus 1 x6 x5 CRISPR array Location: 44781-45138 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 44781-45138 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 47002-47292 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 47002-47292 bp Num of repeats: 5 Spacers: s6-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 44781-45138 bp]: array | spacers
           [Locus range 47002-47292 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: CAAJNV010000047.1 Clostridioides difficile strain Lew011 genome assembly, contig: ERS007228SCcontig000047, whole genome shotgun sequence

⇒Summary: seq-len = 31801 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30035-30992 bp Zoom in on locus 1 x15 CRISPR array Location: 30035-30992 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 30035-30992 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30035-30992 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: CAAJNV010000008.1 Clostridioides difficile strain Lew011 genome assembly, contig: ERS007228SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 105844 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61990-62676 bp Zoom in on locus 1 x11 CRISPR array Location: 61990-62676 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 61990-62676 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 61990-62676 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)