CRISPRone

CRISPRone report for GCA_901002605.1_4880_5_3

♦ Seq 1: CAAJNJ010000081.1 Clostridioides difficile strain Bel022 genome assembly, contig: ERS005834SCcontig000081, whole genome shotgun sequence

⇒Summary: seq-len = 8602 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1584-2733 bp Zoom in on locus 1 x18 CRISPR array Location: 1584-2733 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 1584-2733 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1584-2733 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJNJ010000019.1 Clostridioides difficile strain Bel022 genome assembly, contig: ERS005834SCcontig000019, whole genome shotgun sequence

⇒Summary: seq-len = 63309 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51345-62998 bp Zoom in on locus 1 x40 Gene: cd09725:cas2 Type: universal Location: 51345-51635 bp Gene: cd09722:cas1 Type: universal Location: 51846-52853 bp Gene: pfam01930:cas4 Type: Type-I Location: 52879-53373 bp CRISPR array Location: 53458-56056 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 53458-56056 bp Num of repeats: 40 Spacers: s1-s39 Gene: unk Type: unknown Location: 54081-54209 bp Gene: cd09641:cas3HD Type: Type-I Location: 56246-58804 bp Gene: cd09693:cas5 Type: Type-I Location: 58828-59568 bp Gene: pfam05107:cas7b Type: Type-I Location: 59570-60559 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 60552-62291 bp Gene: cd09652:cas6 Type: other Location: 62303-62998 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 53458-56056 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJNJ010000048.1 Clostridioides difficile strain Bel022 genome assembly, contig: ERS005834SCcontig000048, whole genome shotgun sequence

⇒Summary: seq-len = 32012 bp; # of CRISPR array = 1; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11300-23610 bp Zoom in on locus 1 x44 CRISPR array Location: 11300-14164 bp Num of repeats: 44 Spacers: s1-s43 CRISPR array Location: 11300-14164 bp Num of repeats: 44 Spacers: s1-s43 Gene: cd09718:cas1 Type: universal Location: 21566-23221 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 23233-23610 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 11300-14164 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJNJ010000014.1 Clostridioides difficile strain Bel022 genome assembly, contig: ERS005834SCcontig000014, whole genome shotgun sequence

⇒Summary: seq-len = 68074 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32057-43010 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 32057-32542 bp Gene: cd06127:DEDDh Type: Type-I Location: 39357-40394 bp Gene: unk Type: unknown Location: 40758-41264 bp Gene: unk Type: unknown Location: 41677-42345 bp Gene: cd06127:DEDDh Type: Type-I Location: 42504-43010 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJNJ010000051.1 Clostridioides difficile strain Bel022 genome assembly, contig: ERS005834SCcontig000051, whole genome shotgun sequence

⇒Summary: seq-len = 28695 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7182-18880 bp Zoom in on locus 1 x33 CRISPR array Location: 7182-9303 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 7182-9303 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 9487-9753 bp Gene: cd09722:cas1 Type: universal Location: 9756-10736 bp Gene: pfam01930:cas4 Type: Type-I Location: 10739-11257 bp Gene: COG1203:cas3 Type: Type-I Location: 11305-13626 bp Gene: cd09693:cas5 Type: Type-I Location: 13637-14338 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 14340-15254 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 15256-17106 bp Gene: pfam01881:cas6 Type: other Location: 17112-17849 bp Gene: pfam13280:WYL Type: other Location: 17927-18880 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7182-9303 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJNJ010000040.1 Clostridioides difficile strain Bel022 genome assembly, contig: ERS005834SCcontig000040, whole genome shotgun sequence

⇒Summary: seq-len = 35980 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19847-20661 bp Zoom in on locus 1 x13 CRISPR array Location: 19847-20661 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 19847-20661 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19847-20661 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJNJ010000034.1 Clostridioides difficile strain Bel022 genome assembly, contig: ERS005834SCcontig000034, whole genome shotgun sequence

⇒Summary: seq-len = 47437 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 26000-26626 bp Zoom in on locus 1 x10 CRISPR array Location: 26000-26626 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 26000-26626 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 26000-26626 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: CAAJNJ010000026.1 Clostridioides difficile strain Bel022 genome assembly, contig: ERS005834SCcontig000026, whole genome shotgun sequence

⇒Summary: seq-len = 55387 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 26420-34747 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 26420-27529 bp Gene: unk Type: unknown Location: 27982-28158 bp Gene: pfam01881:cas6 Type: other Location: 28259-28996 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 29001-30467 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 30486-31499 bp Gene: cd09693:cas5 Type: Type-I Location: 31515-32312 bp Gene: cd09641:cas3HD Type: Type-I Location: 32339-34747 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)