CRISPRone

CRISPRone report for GCA_901002655.1_4995_2_6

♦ Seq 1: CAAJNS010000014.1 Clostridioides difficile strain Gla017 genome assembly, contig: ERS009003SCcontig000014, whole genome shotgun sequence

⇒Summary: seq-len = 106661 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69537-76069 bp Zoom in on locus 1 x10 CRISPR array Location: 69537-70159 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 69537-70159 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 70412-72397 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72408-73478 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 73499-74665 bp Gene: pfam01881:cas6 Type: other Location: 74667-75431 bp Gene: cd09693:cas5 Type: Type-I Location: 75422-76069 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 69537-70159 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJNS010000010.1 Clostridioides difficile strain Gla017 genome assembly, contig: ERS009003SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 122164 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45082-52957 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 45082-47490 bp Gene: cd09693:cas5 Type: Type-I Location: 47517-48323 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48339-49352 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 49372-50847 bp Gene: pfam01881:cas6 Type: other Location: 50852-51589 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 51848-52957 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJNS010000006.1 Clostridioides difficile strain Gla017 genome assembly, contig: ERS009003SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 140830 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113429-124415 bp Zoom in on locus 1 x22 CRISPR array Location: 113429-114850 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 113429-114850 bp Num of repeats: 22 Spacers: s1-s21 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 114275-114508 bp Gene: cd09725:cas2 Type: universal Location: 115034-115300 bp Gene: cd09722:cas1 Type: universal Location: 115303-116283 bp Gene: pfam01930:cas4 Type: Type-I Location: 116286-116804 bp Gene: COG1203:cas3 Type: Type-I Location: 116852-119173 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 119184-119885 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 119887-120801 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 120803-122680 bp Gene: pfam01881:cas6 Type: other Location: 122686-123480 bp Gene: pfam13280:WYL Type: other Location: 123501-124415 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 113429-114850 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJNS010000026.1 Clostridioides difficile strain Gla017 genome assembly, contig: ERS009003SCcontig000026, whole genome shotgun sequence

⇒Summary: seq-len = 55329 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30689-30983 bp Zoom in on locus 1 x5 CRISPR array Location: 30689-30983 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 30689-30983 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30689-30983 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJNS010000017.1 Clostridioides difficile strain Gla017 genome assembly, contig: ERS009003SCcontig000017, whole genome shotgun sequence

⇒Summary: seq-len = 93637 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 67930-70441 bp Zoom in on locus 1 x6 x5 CRISPR array Location: 67930-68287 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 67930-68287 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 70151-70441 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 70151-70441 bp Num of repeats: 5 Spacers: s6-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 67930-68287 bp]: array | spacers
           [Locus range 70151-70441 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJNS010000001.1 Clostridioides difficile strain Gla017 genome assembly, contig: ERS009003SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 241065 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 178362-179049 bp Zoom in on locus 1 x11 CRISPR array Location: 178362-179049 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 178362-179049 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 178362-179049 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJNS010000047.1 Clostridioides difficile strain Gla017 genome assembly, contig: ERS009003SCcontig000047, whole genome shotgun sequence

⇒Summary: seq-len = 24261 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13508-13603 bp Zoom in on locus 1 x2 CRISPR array Location: 13508-13603 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 13508-13603 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13508-13603 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: CAAJNS010000005.1 Clostridioides difficile strain Gla017 genome assembly, contig: ERS009003SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 166476 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112617-113441 bp Zoom in on locus 1 x13 CRISPR array Location: 112617-113441 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 112617-113441 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112617-113441 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: CAAJNS010000041.1 Clostridioides difficile strain Gla017 genome assembly, contig: ERS009003SCcontig000041, whole genome shotgun sequence

⇒Summary: seq-len = 31786 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30043-31000 bp Zoom in on locus 1 x15 CRISPR array Location: 30043-31000 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 30043-31000 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30043-31000 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: CAAJNS010000002.1 Clostridioides difficile strain Gla017 genome assembly, contig: ERS009003SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 198654 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 192495-193121 bp Zoom in on locus 1 x10 CRISPR array Location: 192495-193121 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 192495-193121 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 192495-193121 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)