CRISPRone

CRISPRone report for GCA_901002685.1_4995_2_9

♦ Seq 1: CAAJOA010000094.1 Clostridioides difficile strain Gla020 genome assembly, contig: ERS009006SCcontig000094, whole genome shotgun sequence

⇒Summary: seq-len = 14754 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2917-3542 bp Zoom in on locus 1 x10 CRISPR array Location: 2917-3542 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 2917-3542 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2917-3542 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJOA010000162.1 Clostridioides difficile strain Gla020 genome assembly, contig: ERS009006SCcontig000162, whole genome shotgun sequence

⇒Summary: seq-len = 4645 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3477-4301 bp Zoom in on locus 1 x13 CRISPR array Location: 3477-4301 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 3477-4301 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3477-4301 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJOA010000072.1 Clostridioides difficile strain Gla020 genome assembly, contig: ERS009006SCcontig000072, whole genome shotgun sequence

⇒Summary: seq-len = 22595 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1953-12939 bp Zoom in on locus 1 x22 CRISPR array Location: 1953-3374 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 1953-3374 bp Num of repeats: 22 Spacers: s1-s21 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 2799-3032 bp Gene: cd09725:cas2 Type: universal Location: 3558-3824 bp Gene: cd09722:cas1 Type: universal Location: 3827-4807 bp Gene: pfam01930:cas4 Type: Type-I Location: 4810-5328 bp Gene: COG1203:cas3 Type: Type-I Location: 5376-7697 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 7708-8409 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 8411-9325 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 9327-11204 bp Gene: pfam01881:cas6 Type: other Location: 11210-12004 bp Gene: pfam13280:WYL Type: other Location: 12025-12939 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1953-3374 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJOA010000205.1 Clostridioides difficile strain Gla020 genome assembly, contig: ERS009006SCcontig000205, whole genome shotgun sequence

⇒Summary: seq-len = 1269 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 800-1228 bp Zoom in on locus 1 x7 CRISPR array Location: 800-1228 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 800-1228 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 800-1228 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJOA010000164.1 Clostridioides difficile strain Gla020 genome assembly, contig: ERS009006SCcontig000164, whole genome shotgun sequence

⇒Summary: seq-len = 4246 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2010-2104 bp Zoom in on locus 1 x2 CRISPR array Location: 2010-2104 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 2010-2104 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2010-2104 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJOA010000004.1 Clostridioides difficile strain Gla020 genome assembly, contig: ERS009006SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 92383 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 70686-77218 bp Zoom in on locus 1 x10 CRISPR array Location: 70686-71308 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 70686-71308 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 71561-73546 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 73557-74627 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 74648-75814 bp Gene: pfam01881:cas6 Type: other Location: 75816-76580 bp Gene: cd09693:cas5 Type: Type-I Location: 76571-77218 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 70686-71308 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJOA010000174.1 Clostridioides difficile strain Gla020 genome assembly, contig: ERS009006SCcontig000174, whole genome shotgun sequence

⇒Summary: seq-len = 3285 bp; # of CRISPR array = 0; # of cas gene = 3  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-3142 bp Zoom in on locus 1 Gene: cas14:cas14 Type: Type-V Location: 2-247 bp Gene: COG2378:WYL Type: other Location: 886-1797 bp Gene: unk Type: unknown Location: 1908-2375 bp Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 2543-3142 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: CAAJOA010000058.1 Clostridioides difficile strain Gla020 genome assembly, contig: ERS009006SCcontig000058, whole genome shotgun sequence

⇒Summary: seq-len = 26335 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 654-3165 bp Zoom in on locus 1 x6 x5 CRISPR array Location: 654-1011 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 654-1011 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 2875-3165 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 2875-3165 bp Num of repeats: 5 Spacers: s6-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 654-1011 bp]: array | spacers
           [Locus range 2875-3165 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: CAAJOA010000003.1 Clostridioides difficile strain Gla020 genome assembly, contig: ERS009006SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 96552 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69091-76966 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 69091-70200 bp Gene: pfam01881:cas6 Type: other Location: 70459-71196 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 71201-72676 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72696-73709 bp Gene: cd09693:cas5 Type: Type-I Location: 73725-74531 bp Gene: cd09641:cas3HD Type: Type-I Location: 74558-76966 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: CAAJOA010000056.1 Clostridioides difficile strain Gla020 genome assembly, contig: ERS009006SCcontig000056, whole genome shotgun sequence

⇒Summary: seq-len = 26589 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 26054-26545 bp Zoom in on locus 1 x8 CRISPR array Location: 26054-26545 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 26054-26545 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 26054-26545 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: CAAJOA010000001.1 Clostridioides difficile strain Gla020 genome assembly, contig: ERS009006SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 106808 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 54236-54922 bp Zoom in on locus 1 x11 CRISPR array Location: 54236-54922 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 54236-54922 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 54236-54922 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: CAAJOA010000110.1 Clostridioides difficile strain Gla020 genome assembly, contig: ERS009006SCcontig000110, whole genome shotgun sequence

⇒Summary: seq-len = 12092 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3076-3370 bp Zoom in on locus 1 x5 CRISPR array Location: 3076-3370 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 3076-3370 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3076-3370 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)