CRISPRone

CRISPRone report for GCA_901004495.1_7614_4_53

♦ Seq 1: CAAJVA010000003.1 Clostridioides difficile strain lsh16 genome assembly, contig: ERS080220SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 278329 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86992-88009 bp Zoom in on locus 1 x16 CRISPR array Location: 86992-88009 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 86992-88009 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 86992-88009 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJVA010000027.1 Clostridioides difficile strain lsh16 genome assembly, contig: ERS080220SCcontig000027, whole genome shotgun sequence

⇒Summary: seq-len = 13951 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2341-5996 bp Zoom in on locus 1 x3 x17 x3 CRISPR array Location: 2341-2502 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 2341-2502 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 3104-4191 bp Num of repeats: 17 Spacers: s3-s18 CRISPR array Location: 3104-4191 bp Num of repeats: 17 Spacers: s3-s18 CRISPR array Location: 5835-5996 bp Num of repeats: 3 Spacers: s19-s20 CRISPR array Location: 5835-5996 bp Num of repeats: 3 Spacers: s19-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2341-2502 bp]: array | spacers
           [Locus range 3104-4191 bp]: array | spacers
           [Locus range 5835-5996 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJVA010000008.1 Clostridioides difficile strain lsh16 genome assembly, contig: ERS080220SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 195265 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 129157-130042 bp Zoom in on locus 1 x14 CRISPR array Location: 129157-130042 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 129157-130042 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 129157-130042 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJVA010000006.1 Clostridioides difficile strain lsh16 genome assembly, contig: ERS080220SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 209481 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90922-91215 bp Zoom in on locus 1 x5 CRISPR array Location: 90922-91215 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 90922-91215 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90922-91215 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJVA010000015.1 Clostridioides difficile strain lsh16 genome assembly, contig: ERS080220SCcontig000015, whole genome shotgun sequence

⇒Summary: seq-len = 106895 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88861-89155 bp Zoom in on locus 1 x5 CRISPR array Location: 88861-89155 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 88861-89155 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 88861-89155 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJVA010000001.1 Clostridioides difficile strain lsh16 genome assembly, contig: ERS080220SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 900133 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45062-45288 bp 2 Locus 2: 118569-126437 bp 3 Locus 3: 291390-291750 bp 4 Locus 4: 647052-647343 bp Zoom in on locus 1 x4 Zoom in on locus 2 Zoom in on locus 3 x6 Zoom in on locus 4 x5 CRISPR array Location: 45062-45288 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 45062-45288 bp Num of repeats: 4 Spacers: s1-s3 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 118569-119678 bp Gene: pfam01881:cas6 Type: other Location: 119936-120673 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 120678-122153 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 122173-123189 bp Gene: cd09693:cas5 Type: Type-I Location: 123205-124002 bp Gene: cd09641:cas3HD Type: Type-I Location: 124029-126437 bp CRISPR array Location: 291390-291750 bp Num of repeats: 6 Spacers: s4-s8 CRISPR array Location: 291390-291750 bp Num of repeats: 6 Spacers: s4-s8 CRISPR array Location: 647052-647343 bp Num of repeats: 5 Spacers: s9-s12 CRISPR array Location: 647052-647343 bp Num of repeats: 5 Spacers: s9-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 45062-45288 bp]: array | spacers
           [Locus range 291390-291750 bp]: array | spacers
           [Locus range 647052-647343 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)