CRISPRone

CRISPRone report for GCA_901004505.1_7614_4_54

♦ Seq 1: CAAJUZ010000008.1 Clostridioides difficile strain lsh17 genome assembly, contig: ERS080221SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 184941 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 47490-59991 bp Zoom in on locus 1 x45 Gene: pfam13280:WYL Type: other Location: 47490-48443 bp Gene: pfam01881:cas6 Type: other Location: 48521-49258 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 49264-51114 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 51116-52030 bp Gene: cd09693:cas5 Type: Type-I Location: 52032-52733 bp Gene: COG1203:cas3 Type: Type-I Location: 52744-55065 bp Gene: pfam01930:cas4 Type: Type-I Location: 55080-55631 bp Gene: cd09722:cas1 Type: universal Location: 55634-56614 bp Gene: cd09725:cas2 Type: universal Location: 56617-56883 bp CRISPR array Location: 57067-59991 bp Num of repeats: 45 Spacers: s1-s44 CRISPR array Location: 57067-59991 bp Num of repeats: 45 Spacers: s1-s44 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 57067-59991 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJUZ010000021.1 Clostridioides difficile strain lsh17 genome assembly, contig: ERS080221SCcontig000021, whole genome shotgun sequence

⇒Summary: seq-len = 88843 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4350-5240 bp Zoom in on locus 1 x14 CRISPR array Location: 4350-5240 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 4350-5240 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4350-5240 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJUZ010000036.1 Clostridioides difficile strain lsh17 genome assembly, contig: ERS080221SCcontig000036, whole genome shotgun sequence

⇒Summary: seq-len = 16252 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8741-8967 bp Zoom in on locus 1 x4 CRISPR array Location: 8741-8967 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 8741-8967 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8741-8967 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJUZ010000004.1 Clostridioides difficile strain lsh17 genome assembly, contig: ERS080221SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 235701 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 174639-185625 bp Zoom in on locus 1 Gene: cd06127:DEDDh Type: Type-I Location: 174639-175145 bp Gene: unk Type: unknown Location: 175304-175972 bp Gene: unk Type: unknown Location: 176385-176891 bp Gene: cd06127:DEDDh Type: Type-I Location: 177263-178300 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 185140-185625 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJUZ010000011.1 Clostridioides difficile strain lsh17 genome assembly, contig: ERS080221SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 139849 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61746-62957 bp Zoom in on locus 1 x19 CRISPR array Location: 61746-62957 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 61746-62957 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 61746-62957 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJUZ010000001.1 Clostridioides difficile strain lsh17 genome assembly, contig: ERS080221SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 342409 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97266-97623 bp 2 Locus 2: 205467-205561 bp Zoom in on locus 1 x6 Zoom in on locus 2 x2 CRISPR array Location: 97266-97623 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 97266-97623 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 205467-205561 bp Num of repeats: 2 Spacers: s6-s6 CRISPR array Location: 205467-205561 bp Num of repeats: 2 Spacers: s6-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 97266-97623 bp]: array | spacers
           [Locus range 205467-205561 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJUZ010000019.1 Clostridioides difficile strain lsh17 genome assembly, contig: ERS080221SCcontig000019, whole genome shotgun sequence

⇒Summary: seq-len = 95050 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8388-12097 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 8388-8687 bp Gene: unk Type: unknown Location: 9284-9418 bp Gene: unk Type: unknown Location: 9629-10381 bp Gene: cd09718:cas1 Type: universal Location: 10442-12097 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: CAAJUZ010000012.1 Clostridioides difficile strain lsh17 genome assembly, contig: ERS080221SCcontig000012, whole genome shotgun sequence

⇒Summary: seq-len = 139888 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3844-4423 bp Zoom in on locus 1 x3 x6 CRISPR array Location: 3844-4004 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 3844-4004 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 4066-4423 bp Num of repeats: 6 Spacers: s3-s7 CRISPR array Location: 4066-4423 bp Num of repeats: 6 Spacers: s3-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3844-4004 bp]: array | spacers
           [Locus range 4066-4423 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: CAAJUZ010000002.1 Clostridioides difficile strain lsh17 genome assembly, contig: ERS080221SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 287029 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 204436-204663 bp 2 Locus 2: 277225-285092 bp Zoom in on locus 1 x4 Zoom in on locus 2 CRISPR array Location: 204436-204663 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 204436-204663 bp Num of repeats: 4 Spacers: s1-s3 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 277225-278334 bp Gene: pfam01881:cas6 Type: other Location: 278592-279329 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 279334-280809 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 280828-281844 bp Gene: cd09693:cas5 Type: Type-I Location: 281860-282657 bp Gene: cd09641:cas3HD Type: Type-I Location: 282684-285092 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 204436-204663 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: CAAJUZ010000032.1 Clostridioides difficile strain lsh17 genome assembly, contig: ERS080221SCcontig000032, whole genome shotgun sequence

⇒Summary: seq-len = 22940 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2201-4718 bp Zoom in on locus 1 x8 x3 CRISPR array Location: 2201-2691 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 2201-2691 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 4559-4718 bp Num of repeats: 3 Spacers: s8-s9 CRISPR array Location: 4559-4718 bp Num of repeats: 3 Spacers: s8-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2201-2691 bp]: array | spacers
           [Locus range 4559-4718 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)