CRISPRone

CRISPRone report for GCA_901004535.1_7614_4_61

♦ Seq 1: CAAJVF010000003.1 Clostridioides difficile strain lsh25 genome assembly, contig: ERS080228SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 313337 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 218786-228968 bp 2 Locus 2: 266476-267292 bp Zoom in on locus 1 x12 Zoom in on locus 2 x13 CRISPR array Location: 218786-219540 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 218786-219540 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09718:cas1 Type: universal Location: 226924-228579 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 228591-228968 bp CRISPR array Location: 266476-267292 bp Num of repeats: 13 Spacers: s12-s23 CRISPR array Location: 266476-267292 bp Num of repeats: 13 Spacers: s12-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 218786-219540 bp]: array | spacers
           [Locus range 266476-267292 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJVF010000037.1 Clostridioides difficile strain lsh25 genome assembly, contig: ERS080228SCcontig000037, whole genome shotgun sequence

⇒Summary: seq-len = 9813 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5046-5139 bp Zoom in on locus 1 x2 CRISPR array Location: 5046-5139 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 5046-5139 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5046-5139 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJVF010000004.1 Clostridioides difficile strain lsh25 genome assembly, contig: ERS080228SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 303563 bp; # of CRISPR array = 1; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 40349-40578 bp 2 Locus 2: 133244-141109 bp 3 Locus 3: 193721-204674 bp Zoom in on locus 1 x4 Zoom in on locus 2 Zoom in on locus 3 CRISPR array Location: 40349-40578 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 40349-40578 bp Num of repeats: 4 Spacers: s1-s3 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 133244-134353 bp Gene: pfam01881:cas6 Type: other Location: 134612-135349 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 135354-136829 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 136848-137861 bp Gene: cd09693:cas5 Type: Type-I Location: 137877-138674 bp Gene: cd09641:cas3HD Type: Type-I Location: 138701-141109 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 193721-194206 bp Gene: cd06127:DEDDh Type: Type-I Location: 201021-202058 bp Gene: unk Type: unknown Location: 202422-202928 bp Gene: unk Type: unknown Location: 203341-204009 bp Gene: cd06127:DEDDh Type: Type-I Location: 204168-204674 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 40349-40578 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJVF010000001.1 Clostridioides difficile strain lsh25 genome assembly, contig: ERS080228SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 396644 bp; # of CRISPR array = 6; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45209-46092 bp 2 Locus 2: 81810-85081 bp 3 Locus 3: 191442-193320 bp 4 Locus 4: 322610-323360 bp Zoom in on locus 1 x14 Zoom in on locus 2 x4 x9 Zoom in on locus 3 x4 x2 Zoom in on locus 4 x12 CRISPR array Location: 45209-46092 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 45209-46092 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 81810-82035 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 81810-82035 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 84528-85081 bp Num of repeats: 9 Spacers: s17-s24 CRISPR array Location: 84528-85081 bp Num of repeats: 9 Spacers: s17-s24 CRISPR array Location: 191442-191668 bp Num of repeats: 4 Spacers: s25-s27 CRISPR array Location: 191442-191668 bp Num of repeats: 4 Spacers: s25-s27 CRISPR array Location: 193226-193320 bp Num of repeats: 2 Spacers: s28-s28 CRISPR array Location: 193226-193320 bp Num of repeats: 2 Spacers: s28-s28 CRISPR array Location: 322610-323360 bp Num of repeats: 12 Spacers: s29-s39 CRISPR array Location: 322610-323360 bp Num of repeats: 12 Spacers: s29-s39 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45209-46092 bp]: array | spacers
           [Locus range 81810-82035 bp]: array | spacers
           [Locus range 84528-85081 bp]: array | spacers
           [Locus range 191442-191668 bp]: array | spacers
           [Locus range 193226-193320 bp]: array | spacers
           [Locus range 322610-323360 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)