CRISPRone

CRISPRone report for GCA_901004555.1_7614_4_64

♦ Seq 1: CAAJVH010000003.1 Clostridioides difficile strain lsh28 genome assembly, contig: ERS080231SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 395867 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44737-46608 bp 2 Locus 2: 92179-92534 bp Zoom in on locus 1 x29 Zoom in on locus 2 x6 CRISPR array Location: 44737-46608 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 44737-46608 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 92179-92534 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 92179-92534 bp Num of repeats: 6 Spacers: s29-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 44737-46608 bp]: array | spacers
           [Locus range 92179-92534 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJVH010000008.1 Clostridioides difficile strain lsh28 genome assembly, contig: ERS080231SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 213551 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90964-91190 bp Zoom in on locus 1 x4 CRISPR array Location: 90964-91190 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 90964-91190 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90964-91190 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJVH010000015.1 Clostridioides difficile strain lsh28 genome assembly, contig: ERS080231SCcontig000015, whole genome shotgun sequence

⇒Summary: seq-len = 96726 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78526-79016 bp Zoom in on locus 1 x8 CRISPR array Location: 78526-79016 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 78526-79016 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78526-79016 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJVH010000024.1 Clostridioides difficile strain lsh28 genome assembly, contig: ERS080231SCcontig000024, whole genome shotgun sequence

⇒Summary: seq-len = 34689 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30869-31819 bp Zoom in on locus 1 x15 CRISPR array Location: 30869-31819 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 30869-31819 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30869-31819 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJVH010000002.1 Clostridioides difficile strain lsh28 genome assembly, contig: ERS080231SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 403394 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252241-262299 bp Zoom in on locus 1 x8 CRISPR array Location: 252241-252734 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 252241-252734 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09725:cas2 Type: universal Location: 252918-253184 bp Gene: cd09722:cas1 Type: universal Location: 253187-254167 bp Gene: pfam01930:cas4 Type: Type-I Location: 254170-254688 bp Gene: COG1203:cas3 Type: Type-I Location: 254736-257057 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 257068-257769 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 257771-258685 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 258687-260564 bp Gene: pfam01881:cas6 Type: other Location: 260570-261364 bp Gene: pfam13280:WYL Type: other Location: 261385-262299 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252241-252734 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJVH010000010.1 Clostridioides difficile strain lsh28 genome assembly, contig: ERS080231SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 211239 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11943-13305 bp 2 Locus 2: 153753-154638 bp Zoom in on locus 1 x3 x8 Zoom in on locus 2 x14 CRISPR array Location: 11943-12104 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 11943-12104 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 12813-13305 bp Num of repeats: 8 Spacers: s3-s9 CRISPR array Location: 12813-13305 bp Num of repeats: 8 Spacers: s3-s9 CRISPR array Location: 153753-154638 bp Num of repeats: 14 Spacers: s10-s22 CRISPR array Location: 153753-154638 bp Num of repeats: 14 Spacers: s10-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11943-12104 bp]: array | spacers
           [Locus range 12813-13305 bp]: array | spacers
           [Locus range 153753-154638 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJVH010000017.1 Clostridioides difficile strain lsh28 genome assembly, contig: ERS080231SCcontig000017, whole genome shotgun sequence

⇒Summary: seq-len = 92912 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24829-32111 bp Zoom in on locus 1 x17 Gene: cd09693:cas5 Type: Type-I Location: 24829-25476 bp Gene: pfam01881:cas6 Type: other Location: 25467-26231 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 26233-27381 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 27402-28472 bp Gene: COG1203:cas3 Type: Type-I Location: 28483-30465 bp CRISPR array Location: 31032-32111 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 31032-32111 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31032-32111 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: CAAJVH010000001.1 Clostridioides difficile strain lsh28 genome assembly, contig: ERS080231SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 508510 bp; # of CRISPR array = 1; # of cas gene = 8  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 158978-166834 bp 2 Locus 2: 240116-240210 bp 3 Locus 3: 397035-404495 bp Zoom in on locus 1 Zoom in on locus 2 x2 Zoom in on locus 3 Gene: cd09641:cas3HD Type: Type-I Location: 158978-161386 bp Gene: cd09693:cas5 Type: Type-I Location: 161413-162210 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 162226-163239 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 163259-164725 bp Gene: pfam01881:cas6 Type: other Location: 164730-165467 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 165725-166834 bp CRISPR array Location: 240116-240210 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 240116-240210 bp Num of repeats: 2 Spacers: s1-s1 Gene: mkCas0179:cas2 Type: universal Location: 397035-398300 bp Gene: pfam00078:RT Type: other Location: 402684-404495 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 240116-240210 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)