CRISPRone

CRISPRone report for GCA_901004565.1_7614_4_79

♦ Seq 1: CAAJVE010000010.1 Clostridioides difficile strain Den002 genome assembly, contig: ERS080246SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 149074 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30690-30984 bp 2 Locus 2: 123367-125878 bp Zoom in on locus 1 x5 Zoom in on locus 2 x6 x5 CRISPR array Location: 30690-30984 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 30690-30984 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 123367-123724 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 123367-123724 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 125588-125878 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 125588-125878 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30690-30984 bp]: array | spacers
           [Locus range 123367-123724 bp]: array | spacers
           [Locus range 125588-125878 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJVE010000004.1 Clostridioides difficile strain Den002 genome assembly, contig: ERS080246SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 236324 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45090-52965 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 45090-47498 bp Gene: cd09693:cas5 Type: Type-I Location: 47525-48331 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48347-49360 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 49380-50855 bp Gene: pfam01881:cas6 Type: other Location: 50860-51597 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 51856-52965 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJVE010000003.1 Clostridioides difficile strain Den002 genome assembly, contig: ERS080246SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 289120 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78287-78843 bp 2 Locus 2: 287232-288185 bp Zoom in on locus 1 x9 Zoom in on locus 2 x15 CRISPR array Location: 78287-78843 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 78287-78843 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 287232-288185 bp Num of repeats: 15 Spacers: s9-s22 CRISPR array Location: 287232-288185 bp Num of repeats: 15 Spacers: s9-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78287-78843 bp]: array | spacers
           [Locus range 287232-288185 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJVE010000008.1 Clostridioides difficile strain Den002 genome assembly, contig: ERS080246SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 168991 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 141441-152490 bp Zoom in on locus 1 x23 CRISPR array Location: 141441-142925 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 141441-142925 bp Num of repeats: 23 Spacers: s1-s22 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 142287-142520 bp Gene: unk Type: unknown Location: 142742-142909 bp Gene: cd09725:cas2 Type: universal Location: 143109-143375 bp Gene: cd09722:cas1 Type: universal Location: 143378-144358 bp Gene: pfam01930:cas4 Type: Type-I Location: 144361-144879 bp Gene: COG1203:cas3 Type: Type-I Location: 144927-147248 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 147259-147960 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 147962-148876 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 148878-150755 bp Gene: pfam01881:cas6 Type: other Location: 150761-151555 bp Gene: pfam13280:WYL Type: other Location: 151576-152490 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 141441-142925 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJVE010000006.1 Clostridioides difficile strain Den002 genome assembly, contig: ERS080246SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 186653 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110463-116996 bp Zoom in on locus 1 x10 Gene: cd09693:cas5 Type: Type-I Location: 110463-111110 bp Gene: pfam01881:cas6 Type: other Location: 111101-111865 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 111867-113033 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 113054-114124 bp Gene: COG1203:cas3 Type: Type-I Location: 114135-116120 bp CRISPR array Location: 116373-116996 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 116373-116996 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 116373-116996 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJVE010000002.1 Clostridioides difficile strain Den002 genome assembly, contig: ERS080246SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 354370 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 300131-300757 bp 2 Locus 2: 342377-342472 bp Zoom in on locus 1 x10 Zoom in on locus 2 x2 CRISPR array Location: 300131-300757 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 300131-300757 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 342377-342472 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 342377-342472 bp Num of repeats: 2 Spacers: s10-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 300131-300757 bp]: array | spacers
           [Locus range 342377-342472 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJVE010000001.1 Clostridioides difficile strain Den002 genome assembly, contig: ERS080246SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 357376 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61689-62774 bp Zoom in on locus 1 x17 CRISPR array Location: 61689-62774 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 61689-62774 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 61689-62774 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)