CRISPRone

CRISPRone report for GCA_901004575.1_7614_4_72

♦ Seq 1: CAAJVM010000016.1 Clostridioides difficile strain lsh36 genome assembly, contig: ERS080239SCcontig000016, whole genome shotgun sequence

⇒Summary: seq-len = 93072 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38205-39944 bp Zoom in on locus 1 x27 CRISPR array Location: 38205-39944 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 38205-39944 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38205-39944 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJVM010000011.1 Clostridioides difficile strain lsh36 genome assembly, contig: ERS080239SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 137785 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69259-77124 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 69259-70368 bp Gene: pfam01881:cas6 Type: other Location: 70626-71363 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 71368-72843 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72863-73876 bp Gene: cd09693:cas5 Type: Type-I Location: 73892-74689 bp Gene: cd09641:cas3HD Type: Type-I Location: 74716-77124 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJVM010000012.1 Clostridioides difficile strain lsh36 genome assembly, contig: ERS080239SCcontig000012, whole genome shotgun sequence

⇒Summary: seq-len = 125815 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16413-17822 bp Zoom in on locus 1 x22 CRISPR array Location: 16413-17822 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 16413-17822 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16413-17822 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJVM010000003.1 Clostridioides difficile strain lsh36 genome assembly, contig: ERS080239SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 221891 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29965-30584 bp Zoom in on locus 1 x10 CRISPR array Location: 29965-30584 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 29965-30584 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29965-30584 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJVM010000021.1 Clostridioides difficile strain lsh36 genome assembly, contig: ERS080239SCcontig000021, whole genome shotgun sequence

⇒Summary: seq-len = 66474 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11870-19152 bp Zoom in on locus 1 x17 CRISPR array Location: 11870-12949 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 11870-12949 bp Num of repeats: 17 Spacers: s1-s16 Gene: COG1203:cas3 Type: Type-I Location: 13516-15498 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 15509-16579 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 16600-17748 bp Gene: pfam01881:cas6 Type: other Location: 17750-18514 bp Gene: cd09693:cas5 Type: Type-I Location: 18505-19152 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 11870-12949 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJVM010000006.1 Clostridioides difficile strain lsh36 genome assembly, contig: ERS080239SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 179825 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 100935-102017 bp Zoom in on locus 1 x17 CRISPR array Location: 100935-102017 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 100935-102017 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 100935-102017 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJVM010000002.1 Clostridioides difficile strain lsh36 genome assembly, contig: ERS080239SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 231568 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 130646-141763 bp Zoom in on locus 1 x25 Gene: pfam13280:WYL Type: other Location: 130646-131533 bp Gene: pfam01881:cas6 Type: other Location: 131611-132348 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 132354-134204 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 134206-135120 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 135122-135823 bp Gene: COG1203:cas3 Type: Type-I Location: 135834-138155 bp Gene: pfam01930:cas4 Type: Type-I Location: 138170-138721 bp Gene: cd09722:cas1 Type: universal Location: 138724-139704 bp Gene: cd09725:cas2 Type: universal Location: 139707-139973 bp CRISPR array Location: 140157-141763 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 140157-141763 bp Num of repeats: 25 Spacers: s1-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 140157-141763 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: CAAJVM010000008.1 Clostridioides difficile strain lsh36 genome assembly, contig: ERS080239SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 167024 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 79835-81420 bp Zoom in on locus 1 x3 x13 CRISPR array Location: 79835-79996 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 79835-79996 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 80598-81420 bp Num of repeats: 13 Spacers: s3-s14 CRISPR array Location: 80598-81420 bp Num of repeats: 13 Spacers: s3-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 79835-79996 bp]: array | spacers
           [Locus range 80598-81420 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: CAAJVM010000015.1 Clostridioides difficile strain lsh36 genome assembly, contig: ERS080239SCcontig000015, whole genome shotgun sequence

⇒Summary: seq-len = 106540 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6143-6498 bp Zoom in on locus 1 x6 CRISPR array Location: 6143-6498 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 6143-6498 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6143-6498 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: CAAJVM010000026.1 Clostridioides difficile strain lsh36 genome assembly, contig: ERS080239SCcontig000026, whole genome shotgun sequence

⇒Summary: seq-len = 49892 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45564-45858 bp Zoom in on locus 1 x5 CRISPR array Location: 45564-45858 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 45564-45858 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45564-45858 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: CAAJVM010000035.1 Clostridioides difficile strain lsh36 genome assembly, contig: ERS080239SCcontig000035, whole genome shotgun sequence

⇒Summary: seq-len = 35064 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29325-29551 bp Zoom in on locus 1 x4 CRISPR array Location: 29325-29551 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 29325-29551 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29325-29551 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: CAAJVM010000037.1 Clostridioides difficile strain lsh36 genome assembly, contig: ERS080239SCcontig000037, whole genome shotgun sequence

⇒Summary: seq-len = 28542 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10243-10800 bp Zoom in on locus 1 x9 CRISPR array Location: 10243-10800 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 10243-10800 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10243-10800 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)