CRISPRone

CRISPRone report for GCA_901004585.1_7614_4_68

♦ Seq 1: CAAJVG010000006.1 Clostridioides difficile strain lsh32 genome assembly, contig: ERS080235SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 254996 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 162758-162918 bp Zoom in on locus 1 x3 CRISPR array Location: 162758-162918 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 162758-162918 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 162758-162918 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJVG010000009.1 Clostridioides difficile strain lsh32 genome assembly, contig: ERS080235SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 216073 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124574-125133 bp Zoom in on locus 1 x9 CRISPR array Location: 124574-125133 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 124574-125133 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124574-125133 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJVG010000001.1 Clostridioides difficile strain lsh32 genome assembly, contig: ERS080235SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 530892 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44837-44931 bp 2 Locus 2: 267110-278221 bp Zoom in on locus 1 x2 Zoom in on locus 2 x25 CRISPR array Location: 44837-44931 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 44837-44931 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 267110-267997 bp Gene: pfam01881:cas6 Type: other Location: 268075-268812 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 268818-270668 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 270670-271584 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 271586-272287 bp Gene: COG1203:cas3 Type: Type-I Location: 272298-274619 bp Gene: pfam01930:cas4 Type: Type-I Location: 274634-275185 bp Gene: cd09722:cas1 Type: universal Location: 275188-276168 bp Gene: cd09725:cas2 Type: universal Location: 276171-276437 bp CRISPR array Location: 276621-278221 bp Num of repeats: 25 Spacers: s2-s25 CRISPR array Location: 276621-278221 bp Num of repeats: 25 Spacers: s2-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44837-44931 bp]: array | spacers
           [Locus range 276621-278221 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJVG010000018.1 Clostridioides difficile strain lsh32 genome assembly, contig: ERS080235SCcontig000018, whole genome shotgun sequence

⇒Summary: seq-len = 68292 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3473-4623 bp Zoom in on locus 1 x18 CRISPR array Location: 3473-4623 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 3473-4623 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3473-4623 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJVG010000012.1 Clostridioides difficile strain lsh32 genome assembly, contig: ERS080235SCcontig000012, whole genome shotgun sequence

⇒Summary: seq-len = 191028 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 171865-172621 bp Zoom in on locus 1 x12 CRISPR array Location: 171865-172621 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 171865-172621 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 171865-172621 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJVG010000002.1 Clostridioides difficile strain lsh32 genome assembly, contig: ERS080235SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 370763 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44385-44743 bp 2 Locus 2: 118025-126346 bp 3 Locus 3: 289618-290235 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 44385-44743 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 44385-44743 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 118025-119134 bp Gene: unk Type: unknown Location: 119568-119744 bp Gene: pfam01881:cas6 Type: other Location: 119845-120582 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 120587-122062 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 122082-123098 bp Gene: cd09693:cas5 Type: Type-I Location: 123114-123911 bp Gene: cd09641:cas3HD Type: Type-I Location: 123938-126346 bp CRISPR array Location: 289618-290235 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 289618-290235 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44385-44743 bp]: array | spacers
           [Locus range 289618-290235 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)