CRISPRone

CRISPRone report for GCA_901004615.1_7614_4_73

♦ Seq 1: CAAJVI010000001.1 Clostridioides difficile strain lsh37 genome assembly, contig: ERS080240SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 672473 bp; # of CRISPR array = 3; # of cas gene = 11  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 74392-81674 bp 2 Locus 2: 378898-379979 bp 3 Locus 3: 545417-553282 bp 4 Locus 4: 626552-626910 bp Zoom in on locus 1 x17 Zoom in on locus 2 x17 Zoom in on locus 3 Zoom in on locus 4 x6 CRISPR array Location: 74392-75471 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 74392-75471 bp Num of repeats: 17 Spacers: s1-s16 Gene: COG1203:cas3 Type: Type-I Location: 76038-78020 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 78031-79101 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 79122-80270 bp Gene: pfam01881:cas6 Type: other Location: 80272-81036 bp Gene: cd09693:cas5 Type: Type-I Location: 81027-81674 bp CRISPR array Location: 378898-379979 bp Num of repeats: 17 Spacers: s17-s32 CRISPR array Location: 378898-379979 bp Num of repeats: 17 Spacers: s17-s32 Gene: cd09641:cas3HD Type: Type-I Location: 545417-547825 bp Gene: cd09693:cas5 Type: Type-I Location: 547852-548649 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 548665-549678 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 549698-551173 bp Gene: pfam01881:cas6 Type: other Location: 551178-551915 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 552173-553282 bp CRISPR array Location: 626552-626910 bp Num of repeats: 6 Spacers: s33-s37 CRISPR array Location: 626552-626910 bp Num of repeats: 6 Spacers: s33-s37 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 74392-75471 bp]: array | spacers
           [Locus range 378898-379979 bp]: array | spacers
           [Locus range 626552-626910 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJVI010000003.1 Clostridioides difficile strain lsh37 genome assembly, contig: ERS080240SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 493144 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90886-91241 bp 2 Locus 2: 296846-297465 bp Zoom in on locus 1 x6 Zoom in on locus 2 x10 CRISPR array Location: 90886-91241 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 90886-91241 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 296846-297465 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 296846-297465 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90886-91241 bp]: array | spacers
           [Locus range 296846-297465 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJVI010000002.1 Clostridioides difficile strain lsh37 genome assembly, contig: ERS080240SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 620538 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17743-18301 bp 2 Locus 2: 199987-201726 bp Zoom in on locus 1 x9 Zoom in on locus 2 x27 CRISPR array Location: 17743-18301 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 17743-18301 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 199987-201726 bp Num of repeats: 27 Spacers: s9-s34 CRISPR array Location: 199987-201726 bp Num of repeats: 27 Spacers: s9-s34 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17743-18301 bp]: array | spacers
           [Locus range 199987-201726 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJVI010000004.1 Clostridioides difficile strain lsh37 genome assembly, contig: ERS080240SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 397415 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 255589-266797 bp Zoom in on locus 1 x26 CRISPR array Location: 255589-257259 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 255589-257259 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09725:cas2 Type: universal Location: 257443-257709 bp Gene: cd09722:cas1 Type: universal Location: 257712-258692 bp Gene: pfam01930:cas4 Type: Type-I Location: 258695-259213 bp Gene: COG1203:cas3 Type: Type-I Location: 259261-261582 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 261593-262294 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 262296-263210 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 263212-265062 bp Gene: pfam01881:cas6 Type: other Location: 265068-265862 bp Gene: pfam13280:WYL Type: other Location: 265883-266797 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 255589-257259 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)