CRISPRone

CRISPRone report for GCA_901004625.1_7614_4_82

♦ Seq 1: CAAJVK010000007.1 Clostridioides difficile strain Den005 genome assembly, contig: ERS080249SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 187237 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110485-117018 bp Zoom in on locus 1 x10 Gene: cd09693:cas5 Type: Type-I Location: 110485-111132 bp Gene: pfam01881:cas6 Type: other Location: 111123-111887 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 111889-113055 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 113076-114146 bp Gene: COG1203:cas3 Type: Type-I Location: 114157-116142 bp CRISPR array Location: 116395-117018 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 116395-117018 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 116395-117018 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJVK010000003.1 Clostridioides difficile strain Den005 genome assembly, contig: ERS080249SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 289211 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78335-78891 bp 2 Locus 2: 287280-288233 bp Zoom in on locus 1 x9 Zoom in on locus 2 x15 CRISPR array Location: 78335-78891 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 78335-78891 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 287280-288233 bp Num of repeats: 15 Spacers: s9-s22 CRISPR array Location: 287280-288233 bp Num of repeats: 15 Spacers: s9-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78335-78891 bp]: array | spacers
           [Locus range 287280-288233 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJVK010000001.1 Clostridioides difficile strain Den005 genome assembly, contig: ERS080249SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 409314 bp; # of CRISPR array = 1; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51062-53927 bp 2 Locus 2: 113147-114232 bp Zoom in on locus 1 Zoom in on locus 2 x17 Gene: cas14:cas14 Type: Type-V Location: 51062-51355 bp Gene: unk Type: unknown Location: 51839-53383 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 53559-53927 bp CRISPR array Location: 113147-114232 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 113147-114232 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 113147-114232 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJVK010000002.1 Clostridioides difficile strain Den005 genome assembly, contig: ERS080249SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 354386 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 300114-300740 bp 2 Locus 2: 342360-342455 bp Zoom in on locus 1 x10 Zoom in on locus 2 x2 CRISPR array Location: 300114-300740 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 300114-300740 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 342360-342455 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 342360-342455 bp Num of repeats: 2 Spacers: s10-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 300114-300740 bp]: array | spacers
           [Locus range 342360-342455 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJVK010000009.1 Clostridioides difficile strain Den005 genome assembly, contig: ERS080249SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 169215 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 141578-152694 bp Zoom in on locus 1 x24 CRISPR array Location: 141578-143129 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 141578-143129 bp Num of repeats: 24 Spacers: s1-s23 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 142491-142724 bp Gene: unk Type: unknown Location: 142946-143113 bp Gene: cd09725:cas2 Type: universal Location: 143313-143579 bp Gene: cd09722:cas1 Type: universal Location: 143582-144562 bp Gene: pfam01930:cas4 Type: Type-I Location: 144565-145083 bp Gene: COG1203:cas3 Type: Type-I Location: 145131-147452 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 147463-148164 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 148166-149080 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 149082-150959 bp Gene: pfam01881:cas6 Type: other Location: 150965-151759 bp Gene: pfam13280:WYL Type: other Location: 151780-152694 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 141578-143129 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJVK010000004.1 Clostridioides difficile strain Den005 genome assembly, contig: ERS080249SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 238040 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46246-54121 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 46246-48654 bp Gene: cd09693:cas5 Type: Type-I Location: 48681-49487 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 49503-50516 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 50536-52011 bp Gene: pfam01881:cas6 Type: other Location: 52016-52753 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 53012-54121 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJVK010000010.1 Clostridioides difficile strain Den005 genome assembly, contig: ERS080249SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 149114 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23205-25715 bp 2 Locus 2: 118099-118392 bp Zoom in on locus 1 x5 x6 Zoom in on locus 2 x5 CRISPR array Location: 23205-23494 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23205-23494 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 25359-25715 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 25359-25715 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 118099-118392 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 118099-118392 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23205-23494 bp]: array | spacers
           [Locus range 25359-25715 bp]: array | spacers
           [Locus range 118099-118392 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)