CRISPRone

CRISPRone report for GCA_901004635.1_7614_4_85

♦ Seq 1: CAAJVL010000009.1 Clostridioides difficile strain Den008 genome assembly, contig: ERS080252SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 168911 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 141448-152497 bp Zoom in on locus 1 x23 CRISPR array Location: 141448-142932 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 141448-142932 bp Num of repeats: 23 Spacers: s1-s22 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 142294-142527 bp Gene: unk Type: unknown Location: 142749-142916 bp Gene: cd09725:cas2 Type: universal Location: 143116-143382 bp Gene: cd09722:cas1 Type: universal Location: 143385-144365 bp Gene: pfam01930:cas4 Type: Type-I Location: 144368-144886 bp Gene: COG1203:cas3 Type: Type-I Location: 144934-147255 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 147266-147967 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 147969-148883 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 148885-150762 bp Gene: pfam01881:cas6 Type: other Location: 150768-151562 bp Gene: pfam13280:WYL Type: other Location: 151583-152497 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 141448-142932 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJVL010000008.1 Clostridioides difficile strain Den008 genome assembly, contig: ERS080252SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 186480 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69486-76018 bp Zoom in on locus 1 x10 CRISPR array Location: 69486-70108 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 69486-70108 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 70361-72346 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72357-73427 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 73448-74614 bp Gene: pfam01881:cas6 Type: other Location: 74616-75380 bp Gene: cd09693:cas5 Type: Type-I Location: 75371-76018 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 69486-70108 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJVL010000001.1 Clostridioides difficile strain Den008 genome assembly, contig: ERS080252SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 409042 bp; # of CRISPR array = 1; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51029-53655 bp 2 Locus 2: 112875-113960 bp Zoom in on locus 1 Zoom in on locus 2 x17 Gene: cas14:cas14 Type: Type-V Location: 51029-51490 bp Gene: unk Type: unknown Location: 51567-53111 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 53287-53655 bp CRISPR array Location: 112875-113960 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 112875-113960 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 112875-113960 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJVL010000002.1 Clostridioides difficile strain Den008 genome assembly, contig: ERS080252SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 353633 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11899-11993 bp 2 Locus 2: 53614-54239 bp Zoom in on locus 1 x2 Zoom in on locus 2 x10 CRISPR array Location: 11899-11993 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 11899-11993 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 53614-54239 bp Num of repeats: 10 Spacers: s2-s10 CRISPR array Location: 53614-54239 bp Num of repeats: 10 Spacers: s2-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11899-11993 bp]: array | spacers
           [Locus range 53614-54239 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJVL010000003.1 Clostridioides difficile strain Den008 genome assembly, contig: ERS080252SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 289033 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 807-1761 bp 2 Locus 2: 210149-210706 bp Zoom in on locus 1 x15 Zoom in on locus 2 x9 CRISPR array Location: 807-1761 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 807-1761 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 210149-210706 bp Num of repeats: 9 Spacers: s15-s22 CRISPR array Location: 210149-210706 bp Num of repeats: 9 Spacers: s15-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 807-1761 bp]: array | spacers
           [Locus range 210149-210706 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJVL010000010.1 Clostridioides difficile strain Den008 genome assembly, contig: ERS080252SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 149081 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23205-25715 bp 2 Locus 2: 118099-118392 bp Zoom in on locus 1 x5 x6 Zoom in on locus 2 x5 CRISPR array Location: 23205-23494 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23205-23494 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 25359-25715 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 25359-25715 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 118099-118392 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 118099-118392 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23205-23494 bp]: array | spacers
           [Locus range 25359-25715 bp]: array | spacers
           [Locus range 118099-118392 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJVL010000004.1 Clostridioides difficile strain Den008 genome assembly, contig: ERS080252SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 237712 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 183592-191467 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 183592-184701 bp Gene: pfam01881:cas6 Type: other Location: 184960-185697 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 185702-187177 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 187197-188210 bp Gene: cd09693:cas5 Type: Type-I Location: 188226-189032 bp Gene: cd09641:cas3HD Type: Type-I Location: 189059-191467 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)