CRISPRone

CRISPRone report for GCA_901004645.1_7614_4_81

♦ Seq 1: CAAJVN010000017.1 Clostridioides difficile strain Den004 genome assembly, contig: ERS080248SCcontig000017, whole genome shotgun sequence

⇒Summary: seq-len = 99202 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44960-45586 bp 2 Locus 2: 87206-87301 bp Zoom in on locus 1 x10 Zoom in on locus 2 x2 CRISPR array Location: 44960-45586 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 44960-45586 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 87206-87301 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 87206-87301 bp Num of repeats: 2 Spacers: s10-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 44960-45586 bp]: array | spacers
           [Locus range 87206-87301 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJVN010000004.1 Clostridioides difficile strain Den004 genome assembly, contig: ERS080248SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 236411 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 183446-191321 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 183446-184555 bp Gene: pfam01881:cas6 Type: other Location: 184814-185551 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 185556-187031 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 187051-188064 bp Gene: cd09693:cas5 Type: Type-I Location: 188080-188886 bp Gene: cd09641:cas3HD Type: Type-I Location: 188913-191321 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJVN010000001.1 Clostridioides difficile strain Den004 genome assembly, contig: ERS080248SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 408711 bp; # of CRISPR array = 1; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51025-53324 bp 2 Locus 2: 112544-113629 bp Zoom in on locus 1 Zoom in on locus 2 x17 Gene: cas14:cas14 Type: Type-V Location: 51025-51159 bp Gene: unk Type: unknown Location: 51236-52780 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 52956-53324 bp CRISPR array Location: 112544-113629 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 112544-113629 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 112544-113629 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJVN010000013.1 Clostridioides difficile strain Den004 genome assembly, contig: ERS080248SCcontig000013, whole genome shotgun sequence

⇒Summary: seq-len = 125826 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 49650-56183 bp Zoom in on locus 1 x10 Gene: cd09693:cas5 Type: Type-I Location: 49650-50297 bp Gene: pfam01881:cas6 Type: other Location: 50288-51052 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 51054-52220 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 52241-53311 bp Gene: COG1203:cas3 Type: Type-I Location: 53322-55307 bp CRISPR array Location: 55560-56183 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 55560-56183 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 55560-56183 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJVN010000002.1 Clostridioides difficile strain Den004 genome assembly, contig: ERS080248SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 289121 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 937-1891 bp 2 Locus 2: 210279-210836 bp Zoom in on locus 1 x15 Zoom in on locus 2 x9 CRISPR array Location: 937-1891 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 937-1891 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 210279-210836 bp Num of repeats: 9 Spacers: s15-s22 CRISPR array Location: 210279-210836 bp Num of repeats: 9 Spacers: s15-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 937-1891 bp]: array | spacers
           [Locus range 210279-210836 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJVN010000009.1 Clostridioides difficile strain Den004 genome assembly, contig: ERS080248SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 149107 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30723-31017 bp 2 Locus 2: 123400-125911 bp Zoom in on locus 1 x5 Zoom in on locus 2 x6 x5 CRISPR array Location: 30723-31017 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 30723-31017 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 123400-123757 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 123400-123757 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 125621-125911 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 125621-125911 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30723-31017 bp]: array | spacers
           [Locus range 123400-123757 bp]: array | spacers
           [Locus range 125621-125911 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJVN010000008.1 Clostridioides difficile strain Den004 genome assembly, contig: ERS080248SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 168991 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 141441-152490 bp Zoom in on locus 1 x23 CRISPR array Location: 141441-142925 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 141441-142925 bp Num of repeats: 23 Spacers: s1-s22 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 142287-142520 bp Gene: unk Type: unknown Location: 142742-142909 bp Gene: cd09725:cas2 Type: universal Location: 143109-143375 bp Gene: cd09722:cas1 Type: universal Location: 143378-144358 bp Gene: pfam01930:cas4 Type: Type-I Location: 144361-144879 bp Gene: COG1203:cas3 Type: Type-I Location: 144927-147248 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 147259-147960 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 147962-148876 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 148878-150755 bp Gene: pfam01881:cas6 Type: other Location: 150761-151555 bp Gene: pfam13280:WYL Type: other Location: 151576-152490 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 141441-142925 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)