CRISPRone

CRISPRone report for GCA_901004665.1_7614_4_88

♦ Seq 1: CAAJVP010000009.1 Clostridioides difficile strain tl291 genome assembly, contig: ERS080255SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 149047 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23172-25682 bp 2 Locus 2: 118066-118359 bp Zoom in on locus 1 x5 x6 Zoom in on locus 2 x5 CRISPR array Location: 23172-23461 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23172-23461 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 25326-25682 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 25326-25682 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 118066-118359 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 118066-118359 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23172-23461 bp]: array | spacers
           [Locus range 25326-25682 bp]: array | spacers
           [Locus range 118066-118359 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJVP010000008.1 Clostridioides difficile strain tl291 genome assembly, contig: ERS080255SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 186578 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69537-76069 bp Zoom in on locus 1 x10 CRISPR array Location: 69537-70159 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 69537-70159 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 70412-72397 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72408-73478 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 73499-74665 bp Gene: pfam01881:cas6 Type: other Location: 74667-75431 bp Gene: cd09693:cas5 Type: Type-I Location: 75422-76069 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 69537-70159 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJVP010000003.1 Clostridioides difficile strain tl291 genome assembly, contig: ERS080255SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 353649 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11900-11994 bp 2 Locus 2: 53615-54240 bp Zoom in on locus 1 x2 Zoom in on locus 2 x10 CRISPR array Location: 11900-11994 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 11900-11994 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 53615-54240 bp Num of repeats: 10 Spacers: s2-s10 CRISPR array Location: 53615-54240 bp Num of repeats: 10 Spacers: s2-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11900-11994 bp]: array | spacers
           [Locus range 53615-54240 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJVP010000005.1 Clostridioides difficile strain tl291 genome assembly, contig: ERS080255SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 236340 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45106-52981 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 45106-47514 bp Gene: cd09693:cas5 Type: Type-I Location: 47541-48347 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48363-49376 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 49396-50871 bp Gene: pfam01881:cas6 Type: other Location: 50876-51613 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 51872-52981 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJVP010000011.1 Clostridioides difficile strain tl291 genome assembly, contig: ERS080255SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 140995 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16438-26747 bp Zoom in on locus 1 x25 Gene: pfam13280:WYL Type: other Location: 16438-17325 bp Gene: pfam01881:cas6 Type: other Location: 17403-18140 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 18146-20023 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 20025-20939 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 20941-21642 bp Gene: COG1203:cas3 Type: Type-I Location: 21653-23974 bp Gene: pfam01930:cas4 Type: Type-I Location: 23989-24540 bp Gene: cd09722:cas1 Type: universal Location: 24543-25523 bp Gene: cd09725:cas2 Type: universal Location: 25526-25792 bp CRISPR array Location: 25976-27594 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 25976-27594 bp Num of repeats: 25 Spacers: s1-s24 Gene: unk Type: unknown Location: 26125-26292 bp Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 26514-26747 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25976-27594 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJVP010000002.1 Clostridioides difficile strain tl291 genome assembly, contig: ERS080255SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 405465 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 117017-117975 bp 2 Locus 2: 326363-327050 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 CRISPR array Location: 117017-117975 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 117017-117975 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 326363-327050 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 326363-327050 bp Num of repeats: 11 Spacers: s15-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 117017-117975 bp]: array | spacers
           [Locus range 326363-327050 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJVP010000001.1 Clostridioides difficile strain tl291 genome assembly, contig: ERS080255SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 409161 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 114104-114928 bp Zoom in on locus 1 x13 CRISPR array Location: 114104-114928 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 114104-114928 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 114104-114928 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)