CRISPRone

CRISPRone report for GCA_901004675.1_7614_4_86

♦ Seq 1: CAAJVQ010000010.1 Clostridioides difficile strain Den009 genome assembly, contig: ERS080253SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 149084 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23205-25715 bp 2 Locus 2: 118099-118392 bp Zoom in on locus 1 x5 x6 Zoom in on locus 2 x5 CRISPR array Location: 23205-23494 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23205-23494 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 25359-25715 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 25359-25715 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 118099-118392 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 118099-118392 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23205-23494 bp]: array | spacers
           [Locus range 25359-25715 bp]: array | spacers
           [Locus range 118099-118392 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJVQ010000009.1 Clostridioides difficile strain Den009 genome assembly, contig: ERS080253SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 169052 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16522-26725 bp Zoom in on locus 1 x24 Gene: pfam13280:WYL Type: other Location: 16522-17436 bp Gene: pfam01881:cas6 Type: other Location: 17514-18251 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 18257-20134 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 20136-21050 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 21052-21753 bp Gene: COG1203:cas3 Type: Type-I Location: 21764-24085 bp Gene: pfam01930:cas4 Type: Type-I Location: 24082-24651 bp Gene: cd09722:cas1 Type: universal Location: 24654-25634 bp Gene: cd09725:cas2 Type: universal Location: 25637-25903 bp CRISPR array Location: 26087-27639 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 26087-27639 bp Num of repeats: 24 Spacers: s1-s23 Gene: unk Type: unknown Location: 26103-26270 bp Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 26492-26725 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 26087-27639 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJVQ010000003.1 Clostridioides difficile strain Den009 genome assembly, contig: ERS080253SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 354575 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 299396-300022 bp 2 Locus 2: 341642-341737 bp Zoom in on locus 1 x10 Zoom in on locus 2 x2 CRISPR array Location: 299396-300022 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 299396-300022 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 341642-341737 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 341642-341737 bp Num of repeats: 2 Spacers: s10-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 299396-300022 bp]: array | spacers
           [Locus range 341642-341737 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJVQ010000007.1 Clostridioides difficile strain Den009 genome assembly, contig: ERS080253SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 186221 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110463-116996 bp Zoom in on locus 1 x10 Gene: cd09693:cas5 Type: Type-I Location: 110463-111110 bp Gene: pfam01881:cas6 Type: other Location: 111101-111865 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 111867-113033 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 113054-114124 bp Gene: COG1203:cas3 Type: Type-I Location: 114135-116120 bp CRISPR array Location: 116373-116996 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 116373-116996 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 116373-116996 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJVQ010000002.1 Clostridioides difficile strain Den009 genome assembly, contig: ERS080253SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 372386 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 180881-188756 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 180881-183289 bp Gene: cd09693:cas5 Type: Type-I Location: 183316-184122 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 184138-185151 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 185171-186646 bp Gene: pfam01881:cas6 Type: other Location: 186651-187388 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 187647-188756 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJVQ010000001.1 Clostridioides difficile strain Den009 genome assembly, contig: ERS080253SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 410358 bp; # of CRISPR array = 1; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 295084-296168 bp 2 Locus 2: 355388-358401 bp Zoom in on locus 1 x17 Zoom in on locus 2 CRISPR array Location: 295084-296168 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 295084-296168 bp Num of repeats: 17 Spacers: s1-s16 Gene: COG0640:csa3 Type: Subtype-I-A Location: 355388-355756 bp Gene: unk Type: unknown Location: 355932-357455 bp Gene: cas14:cas14 Type: Type-V Location: 358108-358401 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 295084-296168 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJVQ010000004.1 Clostridioides difficile strain Den009 genome assembly, contig: ERS080253SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 289135 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78287-78843 bp 2 Locus 2: 287232-288185 bp Zoom in on locus 1 x9 Zoom in on locus 2 x15 CRISPR array Location: 78287-78843 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 78287-78843 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 287232-288185 bp Num of repeats: 15 Spacers: s9-s22 CRISPR array Location: 287232-288185 bp Num of repeats: 15 Spacers: s9-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78287-78843 bp]: array | spacers
           [Locus range 287232-288185 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)