CRISPRone

CRISPRone report for GCA_901004685.1_7614_4_87

♦ Seq 1: CAAJVR010000003.1 Clostridioides difficile strain Den010 genome assembly, contig: ERS080254SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 353643 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 299401-300027 bp 2 Locus 2: 341647-341742 bp Zoom in on locus 1 x10 Zoom in on locus 2 x2 CRISPR array Location: 299401-300027 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 299401-300027 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 341647-341742 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 341647-341742 bp Num of repeats: 2 Spacers: s10-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 299401-300027 bp]: array | spacers
           [Locus range 341647-341742 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJVR010000004.1 Clostridioides difficile strain Den010 genome assembly, contig: ERS080254SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 289182 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78329-78885 bp 2 Locus 2: 287274-288227 bp Zoom in on locus 1 x9 Zoom in on locus 2 x15 CRISPR array Location: 78329-78885 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 78329-78885 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 287274-288227 bp Num of repeats: 15 Spacers: s9-s22 CRISPR array Location: 287274-288227 bp Num of repeats: 15 Spacers: s9-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78329-78885 bp]: array | spacers
           [Locus range 287274-288227 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJVR010000005.1 Clostridioides difficile strain Den010 genome assembly, contig: ERS080254SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 257981 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 180937-188812 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 180937-183345 bp Gene: cd09693:cas5 Type: Type-I Location: 183372-184178 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 184194-185207 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 185227-186702 bp Gene: pfam01881:cas6 Type: other Location: 186707-187444 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 187703-188812 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJVR010000019.1 Clostridioides difficile strain Den010 genome assembly, contig: ERS080254SCcontig000019, whole genome shotgun sequence

⇒Summary: seq-len = 76192 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45207-45500 bp Zoom in on locus 1 x5 CRISPR array Location: 45207-45500 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 45207-45500 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45207-45500 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJVR010000002.1 Clostridioides difficile strain Den010 genome assembly, contig: ERS080254SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 410484 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 115166-116251 bp Zoom in on locus 1 x17 CRISPR array Location: 115166-116251 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 115166-116251 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 115166-116251 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJVR010000008.1 Clostridioides difficile strain Den010 genome assembly, contig: ERS080254SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 169018 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 141448-152497 bp Zoom in on locus 1 x23 CRISPR array Location: 141448-142932 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 141448-142932 bp Num of repeats: 23 Spacers: s1-s22 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 142294-142527 bp Gene: unk Type: unknown Location: 142749-142916 bp Gene: cd09725:cas2 Type: universal Location: 143116-143382 bp Gene: cd09722:cas1 Type: universal Location: 143385-144365 bp Gene: pfam01930:cas4 Type: Type-I Location: 144368-144886 bp Gene: COG1203:cas3 Type: Type-I Location: 144934-147255 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 147266-147967 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 147969-148883 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 148885-150762 bp Gene: pfam01881:cas6 Type: other Location: 150768-151562 bp Gene: pfam13280:WYL Type: other Location: 151583-152497 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 141448-142932 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJVR010000021.1 Clostridioides difficile strain Den010 genome assembly, contig: ERS080254SCcontig000021, whole genome shotgun sequence

⇒Summary: seq-len = 72913 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23205-25715 bp Zoom in on locus 1 x5 x6 CRISPR array Location: 23205-23494 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23205-23494 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 25359-25715 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 25359-25715 bp Num of repeats: 6 Spacers: s5-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23205-23494 bp]: array | spacers
           [Locus range 25359-25715 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: CAAJVR010000001.1 Clostridioides difficile strain Den010 genome assembly, contig: ERS080254SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 409426 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 333250-339783 bp Zoom in on locus 1 x10 Gene: cd09693:cas5 Type: Type-I Location: 333250-333897 bp Gene: pfam01881:cas6 Type: other Location: 333888-334652 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 334654-335820 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 335841-336911 bp Gene: COG1203:cas3 Type: Type-I Location: 336922-338907 bp CRISPR array Location: 339160-339783 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 339160-339783 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 339160-339783 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)