CRISPRone

CRISPRone report for GCA_901004695.1_7614_4_90

♦ Seq 1: CAAJVS010000002.1 Clostridioides difficile strain tl293 genome assembly, contig: ERS080257SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 409196 bp; # of CRISPR array = 1; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51057-54070 bp 2 Locus 2: 113291-114115 bp Zoom in on locus 1 Zoom in on locus 2 x13 Gene: cas14:cas14 Type: Type-V Location: 51057-51350 bp Gene: unk Type: unknown Location: 51982-53526 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 53702-54070 bp CRISPR array Location: 113291-114115 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 113291-114115 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 113291-114115 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJVS010000007.1 Clostridioides difficile strain tl293 genome assembly, contig: ERS080257SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 187592 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 70584-77116 bp Zoom in on locus 1 x10 CRISPR array Location: 70584-71206 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 70584-71206 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 71459-73444 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 73455-74525 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 74546-75712 bp Gene: pfam01881:cas6 Type: other Location: 75714-76478 bp Gene: cd09693:cas5 Type: Type-I Location: 76469-77116 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 70584-71206 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJVS010000001.1 Clostridioides difficile strain tl293 genome assembly, contig: ERS080257SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 470369 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 416097-416723 bp 2 Locus 2: 458343-458438 bp Zoom in on locus 1 x10 Zoom in on locus 2 x2 CRISPR array Location: 416097-416723 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 416097-416723 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 458343-458438 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 458343-458438 bp Num of repeats: 2 Spacers: s10-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 416097-416723 bp]: array | spacers
           [Locus range 458343-458438 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJVS010000003.1 Clostridioides difficile strain tl293 genome assembly, contig: ERS080257SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 289275 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 957-1915 bp 2 Locus 2: 210303-210990 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 CRISPR array Location: 957-1915 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 957-1915 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 210303-210990 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 210303-210990 bp Num of repeats: 11 Spacers: s15-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 957-1915 bp]: array | spacers
           [Locus range 210303-210990 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJVS010000011.1 Clostridioides difficile strain tl293 genome assembly, contig: ERS080257SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 141106 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16549-26858 bp Zoom in on locus 1 x25 Gene: pfam13280:WYL Type: other Location: 16549-17436 bp Gene: pfam01881:cas6 Type: other Location: 17514-18251 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 18257-20134 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 20136-21050 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 21052-21753 bp Gene: COG1203:cas3 Type: Type-I Location: 21764-24085 bp Gene: pfam01930:cas4 Type: Type-I Location: 24100-24651 bp Gene: cd09722:cas1 Type: universal Location: 24654-25634 bp Gene: cd09725:cas2 Type: universal Location: 25637-25903 bp CRISPR array Location: 26087-27705 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 26087-27705 bp Num of repeats: 25 Spacers: s1-s24 Gene: unk Type: unknown Location: 26236-26403 bp Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 26625-26858 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 26087-27705 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJVS010000009.1 Clostridioides difficile strain tl293 genome assembly, contig: ERS080257SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 149124 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23216-25726 bp 2 Locus 2: 118110-118403 bp Zoom in on locus 1 x5 x6 Zoom in on locus 2 x5 CRISPR array Location: 23216-23505 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23216-23505 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 25370-25726 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 25370-25726 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 118110-118403 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 118110-118403 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23216-23505 bp]: array | spacers
           [Locus range 25370-25726 bp]: array | spacers
           [Locus range 118110-118403 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJVS010000005.1 Clostridioides difficile strain tl293 genome assembly, contig: ERS080257SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 236580 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45105-52980 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 45105-47513 bp Gene: cd09693:cas5 Type: Type-I Location: 47540-48346 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48362-49375 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 49395-50870 bp Gene: pfam01881:cas6 Type: other Location: 50875-51612 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 51871-52980 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)