CRISPRone

CRISPRone report for GCA_901004705.1_7614_4_89

♦ Seq 1: CAAJVT010000001.1 Clostridioides difficile strain tl292 genome assembly, contig: ERS080256SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 407932 bp; # of CRISPR array = 1; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51029-53655 bp 2 Locus 2: 112876-113700 bp Zoom in on locus 1 Zoom in on locus 2 x13 Gene: cas14:cas14 Type: Type-V Location: 51029-51490 bp Gene: unk Type: unknown Location: 51567-53111 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 53287-53655 bp CRISPR array Location: 112876-113700 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 112876-113700 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 112876-113700 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJVT010000008.1 Clostridioides difficile strain tl292 genome assembly, contig: ERS080256SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 187641 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 70597-77129 bp Zoom in on locus 1 x10 CRISPR array Location: 70597-71219 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 70597-71219 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 71472-73457 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 73468-74538 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 74559-75725 bp Gene: pfam01881:cas6 Type: other Location: 75727-76491 bp Gene: cd09693:cas5 Type: Type-I Location: 76482-77129 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 70597-71219 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJVT010000002.1 Clostridioides difficile strain tl292 genome assembly, contig: ERS080256SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 354252 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 299402-300028 bp 2 Locus 2: 341648-341743 bp Zoom in on locus 1 x10 Zoom in on locus 2 x2 CRISPR array Location: 299402-300028 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 299402-300028 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 341648-341743 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 341648-341743 bp Num of repeats: 2 Spacers: s10-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 299402-300028 bp]: array | spacers
           [Locus range 341648-341743 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJVT010000012.1 Clostridioides difficile strain tl292 genome assembly, contig: ERS080256SCcontig000012, whole genome shotgun sequence

⇒Summary: seq-len = 140999 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113403-124585 bp Zoom in on locus 1 x25 CRISPR array Location: 113403-115020 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 113403-115020 bp Num of repeats: 25 Spacers: s1-s24 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 114249-114482 bp Gene: unk Type: unknown Location: 114704-114871 bp Gene: cd09725:cas2 Type: universal Location: 115204-115470 bp Gene: cd09722:cas1 Type: universal Location: 115473-116453 bp Gene: pfam01930:cas4 Type: Type-I Location: 116456-116974 bp Gene: COG1203:cas3 Type: Type-I Location: 117022-119343 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 119354-120055 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 120057-120971 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 120973-122850 bp Gene: pfam01881:cas6 Type: other Location: 122856-123650 bp Gene: pfam13280:WYL Type: other Location: 123671-124585 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 113403-115020 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJVT010000005.1 Clostridioides difficile strain tl292 genome assembly, contig: ERS080256SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 236335 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45103-52978 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 45103-47511 bp Gene: cd09693:cas5 Type: Type-I Location: 47538-48344 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48360-49373 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 49393-50868 bp Gene: pfam01881:cas6 Type: other Location: 50873-51610 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 51869-52978 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJVT010000003.1 Clostridioides difficile strain tl292 genome assembly, contig: ERS080256SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 289271 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 953-1911 bp 2 Locus 2: 210299-210986 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 CRISPR array Location: 953-1911 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 953-1911 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 210299-210986 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 210299-210986 bp Num of repeats: 11 Spacers: s15-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 953-1911 bp]: array | spacers
           [Locus range 210299-210986 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJVT010000010.1 Clostridioides difficile strain tl292 genome assembly, contig: ERS080256SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 149073 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23198-25708 bp 2 Locus 2: 118092-118385 bp Zoom in on locus 1 x5 x6 Zoom in on locus 2 x5 CRISPR array Location: 23198-23487 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23198-23487 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 25352-25708 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 25352-25708 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 118092-118385 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 118092-118385 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23198-23487 bp]: array | spacers
           [Locus range 25352-25708 bp]: array | spacers
           [Locus range 118092-118385 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)