CRISPRone

CRISPRone report for GCA_901004725.1_7614_4_91

♦ Seq 1: CAAJVV010000002.1 Clostridioides difficile strain tl294 genome assembly, contig: ERS080258SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 357600 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 295084-295907 bp Zoom in on locus 1 x13 CRISPR array Location: 295084-295907 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 295084-295907 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 295084-295907 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJVV010000005.1 Clostridioides difficile strain tl294 genome assembly, contig: ERS080258SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 236339 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45105-52980 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 45105-47513 bp Gene: cd09693:cas5 Type: Type-I Location: 47540-48346 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48362-49375 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 49395-50870 bp Gene: pfam01881:cas6 Type: other Location: 50875-51612 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 51871-52980 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJVV010000001.1 Clostridioides difficile strain tl294 genome assembly, contig: ERS080258SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 469478 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11900-11994 bp 2 Locus 2: 53615-54240 bp Zoom in on locus 1 x2 Zoom in on locus 2 x10 CRISPR array Location: 11900-11994 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 11900-11994 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 53615-54240 bp Num of repeats: 10 Spacers: s2-s10 CRISPR array Location: 53615-54240 bp Num of repeats: 10 Spacers: s2-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11900-11994 bp]: array | spacers
           [Locus range 53615-54240 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJVV010000008.1 Clostridioides difficile strain tl294 genome assembly, contig: ERS080258SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 149091 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23216-25726 bp 2 Locus 2: 118110-118403 bp Zoom in on locus 1 x5 x6 Zoom in on locus 2 x5 CRISPR array Location: 23216-23505 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23216-23505 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 25370-25726 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 25370-25726 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 118110-118403 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 118110-118403 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23216-23505 bp]: array | spacers
           [Locus range 25370-25726 bp]: array | spacers
           [Locus range 118110-118403 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJVV010000003.1 Clostridioides difficile strain tl294 genome assembly, contig: ERS080258SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 289267 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78287-78973 bp 2 Locus 2: 287362-288319 bp Zoom in on locus 1 x11 Zoom in on locus 2 x15 CRISPR array Location: 78287-78973 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 78287-78973 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 287362-288319 bp Num of repeats: 15 Spacers: s11-s24 CRISPR array Location: 287362-288319 bp Num of repeats: 15 Spacers: s11-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78287-78973 bp]: array | spacers
           [Locus range 287362-288319 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJVV010000007.1 Clostridioides difficile strain tl294 genome assembly, contig: ERS080258SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 186729 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69696-76228 bp Zoom in on locus 1 x10 CRISPR array Location: 69696-70318 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 69696-70318 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 70571-72556 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72567-73637 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 73658-74824 bp Gene: pfam01881:cas6 Type: other Location: 74826-75590 bp Gene: cd09693:cas5 Type: Type-I Location: 75581-76228 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 69696-70318 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJVV010000010.1 Clostridioides difficile strain tl294 genome assembly, contig: ERS080258SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 141000 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113403-124585 bp Zoom in on locus 1 x25 CRISPR array Location: 113403-115020 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 113403-115020 bp Num of repeats: 25 Spacers: s1-s24 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 114249-114482 bp Gene: unk Type: unknown Location: 114704-114871 bp Gene: cd09725:cas2 Type: universal Location: 115204-115470 bp Gene: cd09722:cas1 Type: universal Location: 115473-116453 bp Gene: pfam01930:cas4 Type: Type-I Location: 116456-116974 bp Gene: COG1203:cas3 Type: Type-I Location: 117022-119343 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 119354-120055 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 120057-120971 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 120973-122850 bp Gene: pfam01881:cas6 Type: other Location: 122856-123650 bp Gene: pfam13280:WYL Type: other Location: 123671-124585 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 113403-115020 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)