CRISPRone

CRISPRone report for GCA_901004745.1_7614_7_14

♦ Seq 1: CAAJVY010000020.1 Clostridioides difficile strain clo14 genome assembly, contig: ERS080181SCcontig000020, whole genome shotgun sequence

⇒Summary: seq-len = 78170 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4202-16127 bp Zoom in on locus 1 x44 Gene: cd09652:cas6 Type: other Location: 4202-4897 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 4909-6648 bp Gene: pfam05107:cas7b Type: Type-I Location: 6641-7630 bp Gene: cd09693:cas5 Type: Type-I Location: 7632-8372 bp Gene: cd09641:cas3HD Type: Type-I Location: 8396-10954 bp CRISPR array Location: 11144-14015 bp Num of repeats: 44 Spacers: s1-s43 CRISPR array Location: 11144-14015 bp Num of repeats: 44 Spacers: s1-s43 Gene: pfam01930:cas4 Type: Type-I Location: 14099-14593 bp Gene: cd09722:cas1 Type: universal Location: 14619-15626 bp Gene: cd09725:cas2 Type: universal Location: 15837-16127 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 11144-14015 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJVY010000003.1 Clostridioides difficile strain clo14 genome assembly, contig: ERS080181SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 450212 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 93600-93762 bp 2 Locus 2: 411635-411995 bp Zoom in on locus 1 x3 Zoom in on locus 2 x6 CRISPR array Location: 93600-93762 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 93600-93762 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 411635-411995 bp Num of repeats: 6 Spacers: s3-s7 CRISPR array Location: 411635-411995 bp Num of repeats: 6 Spacers: s3-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 93600-93762 bp]: array | spacers
           [Locus range 411635-411995 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJVY010000002.1 Clostridioides difficile strain clo14 genome assembly, contig: ERS080181SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 487778 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 247090-247648 bp 2 Locus 2: 320895-328760 bp Zoom in on locus 1 x9 Zoom in on locus 2 CRISPR array Location: 247090-247648 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 247090-247648 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 320895-322004 bp Gene: pfam01881:cas6 Type: other Location: 322262-322999 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 323004-324479 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 324499-325512 bp Gene: cd09693:cas5 Type: Type-I Location: 325528-326325 bp Gene: cd09641:cas3HD Type: Type-I Location: 326352-328760 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 247090-247648 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJVY010000017.1 Clostridioides difficile strain clo14 genome assembly, contig: ERS080181SCcontig000017, whole genome shotgun sequence

⇒Summary: seq-len = 89936 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2949-3635 bp Zoom in on locus 1 x11 CRISPR array Location: 2949-3635 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 2949-3635 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2949-3635 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJVY010000025.1 Clostridioides difficile strain clo14 genome assembly, contig: ERS080181SCcontig000025, whole genome shotgun sequence

⇒Summary: seq-len = 63120 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17736-17963 bp Zoom in on locus 1 x4 CRISPR array Location: 17736-17963 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 17736-17963 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17736-17963 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJVY010000001.1 Clostridioides difficile strain clo14 genome assembly, contig: ERS080181SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 489206 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91038-91458 bp 2 Locus 2: 299601-299827 bp Zoom in on locus 1 x7 Zoom in on locus 2 x4 CRISPR array Location: 91038-91458 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 91038-91458 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 299601-299827 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 299601-299827 bp Num of repeats: 4 Spacers: s7-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91038-91458 bp]: array | spacers
           [Locus range 299601-299827 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)