CRISPRone

CRISPRone report for GCA_901004755.1_7614_7_11

♦ Seq 1: CAAJVX010000003.1 Clostridioides difficile strain clo11 genome assembly, contig: ERS080178SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 322562 bp; # of CRISPR array = 1; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 52960-53187 bp 2 Locus 2: 132999-141336 bp 3 Locus 3: 192545-203503 bp Zoom in on locus 1 x4 Zoom in on locus 2 Zoom in on locus 3 CRISPR array Location: 52960-53187 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 52960-53187 bp Num of repeats: 4 Spacers: s1-s3 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 132999-134108 bp Gene: unk Type: unknown Location: 134562-134738 bp Gene: pfam01881:cas6 Type: other Location: 134839-135576 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 135581-137056 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 137075-138088 bp Gene: pfam09704:cas5 Type: Type-I Location: 138104-138901 bp Gene: cd09641:cas3HD Type: Type-I Location: 138928-141336 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 192545-193030 bp Gene: cd06127:DEDDh Type: Type-I Location: 199851-200879 bp Gene: unk Type: unknown Location: 201251-201757 bp Gene: unk Type: unknown Location: 202170-202838 bp Gene: cd06127:DEDDh Type: Type-I Location: 202997-203503 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 52960-53187 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJVX010000010.1 Clostridioides difficile strain clo11 genome assembly, contig: ERS080178SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 172749 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164395-171677 bp Zoom in on locus 1 x17 CRISPR array Location: 164395-165474 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 164395-165474 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09639:cas3 Type: Type-I Location: 166041-168023 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 168034-169104 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 169125-170273 bp Gene: pfam01881:cas6 Type: other Location: 170275-171039 bp Gene: cd09693:cas5 Type: Type-I Location: 171030-171677 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 164395-165474 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJVX010000001.1 Clostridioides difficile strain clo11 genome assembly, contig: ERS080178SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 480134 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 188734-189159 bp 2 Locus 2: 395019-395310 bp Zoom in on locus 1 x7 Zoom in on locus 2 x5 CRISPR array Location: 188734-189159 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 188734-189159 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 395019-395310 bp Num of repeats: 5 Spacers: s7-s10 CRISPR array Location: 395019-395310 bp Num of repeats: 5 Spacers: s7-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 188734-189159 bp]: array | spacers
           [Locus range 395019-395310 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJVX010000002.1 Clostridioides difficile strain clo11 genome assembly, contig: ERS080178SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 341672 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23517-23877 bp 2 Locus 2: 194021-194512 bp Zoom in on locus 1 x6 Zoom in on locus 2 x8 CRISPR array Location: 23517-23877 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 23517-23877 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 194021-194512 bp Num of repeats: 8 Spacers: s6-s12 CRISPR array Location: 194021-194512 bp Num of repeats: 8 Spacers: s6-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23517-23877 bp]: array | spacers
           [Locus range 194021-194512 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)