CRISPRone

CRISPRone report for GCA_901004785.1_7614_7_24

♦ Seq 1: CAAJWJ010000009.1 Clostridioides difficile strain clo25 genome assembly, contig: ERS080191SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 149075 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23205-25715 bp 2 Locus 2: 118099-118392 bp Zoom in on locus 1 x5 x6 Zoom in on locus 2 x5 CRISPR array Location: 23205-23494 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23205-23494 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 25359-25715 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 25359-25715 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 118099-118392 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 118099-118392 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23205-23494 bp]: array | spacers
           [Locus range 25359-25715 bp]: array | spacers
           [Locus range 118099-118392 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJWJ010000001.1 Clostridioides difficile strain clo25 genome assembly, contig: ERS080191SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 353618 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11895-11989 bp 2 Locus 2: 53610-54235 bp Zoom in on locus 1 x2 Zoom in on locus 2 x10 CRISPR array Location: 11895-11989 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 11895-11989 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 53610-54235 bp Num of repeats: 10 Spacers: s2-s10 CRISPR array Location: 53610-54235 bp Num of repeats: 10 Spacers: s2-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11895-11989 bp]: array | spacers
           [Locus range 53610-54235 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJWJ010000006.1 Clostridioides difficile strain clo25 genome assembly, contig: ERS080191SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 186687 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110446-116979 bp Zoom in on locus 1 x10 Gene: cd09693:cas5 Type: Type-I Location: 110446-111093 bp Gene: pfam01881:cas6 Type: other Location: 111084-111848 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 111850-113016 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 113037-114107 bp Gene: COG1203:cas3 Type: Type-I Location: 114118-116103 bp CRISPR array Location: 116356-116979 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 116356-116979 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 116356-116979 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJWJ010000005.1 Clostridioides difficile strain clo25 genome assembly, contig: ERS080191SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 237568 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 183355-191230 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 183355-184464 bp Gene: pfam01881:cas6 Type: other Location: 184723-185460 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 185465-186940 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 186960-187973 bp Gene: cd09693:cas5 Type: Type-I Location: 187989-188795 bp Gene: cd09641:cas3HD Type: Type-I Location: 188822-191230 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJWJ010000011.1 Clostridioides difficile strain clo25 genome assembly, contig: ERS080191SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 140973 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113381-124563 bp Zoom in on locus 1 x25 CRISPR array Location: 113381-114998 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 113381-114998 bp Num of repeats: 25 Spacers: s1-s24 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 114227-114460 bp Gene: unk Type: unknown Location: 114682-114849 bp Gene: cd09725:cas2 Type: universal Location: 115182-115448 bp Gene: cd09722:cas1 Type: universal Location: 115451-116431 bp Gene: pfam01930:cas4 Type: Type-I Location: 116434-116952 bp Gene: COG1203:cas3 Type: Type-I Location: 117000-119321 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 119332-120033 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 120035-120949 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 120951-122828 bp Gene: pfam01881:cas6 Type: other Location: 122834-123628 bp Gene: pfam13280:WYL Type: other Location: 123649-124563 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 113381-114998 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJWJ010000002.1 Clostridioides difficile strain clo25 genome assembly, contig: ERS080191SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 309290 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 196157-196980 bp Zoom in on locus 1 x13 CRISPR array Location: 196157-196980 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 196157-196980 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 196157-196980 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJWJ010000003.1 Clostridioides difficile strain clo25 genome assembly, contig: ERS080191SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 289157 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78287-78973 bp 2 Locus 2: 287362-288319 bp Zoom in on locus 1 x11 Zoom in on locus 2 x15 CRISPR array Location: 78287-78973 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 78287-78973 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 287362-288319 bp Num of repeats: 15 Spacers: s11-s24 CRISPR array Location: 287362-288319 bp Num of repeats: 15 Spacers: s11-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78287-78973 bp]: array | spacers
           [Locus range 287362-288319 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)