CRISPRone

CRISPRone report for GCA_901004835.1_7614_7_21

♦ Seq 1: CAAJWC010000001.1 Clostridioides difficile strain clo22 genome assembly, contig: ERS080188SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 746412 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244590-245016 bp 2 Locus 2: 318297-326153 bp 3 Locus 3: 488644-489461 bp Zoom in on locus 1 x7 Zoom in on locus 2 Zoom in on locus 3 x13 CRISPR array Location: 244590-245016 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 244590-245016 bp Num of repeats: 7 Spacers: s1-s6 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318297-319406 bp Gene: pfam01881:cas6 Type: other Location: 319664-320401 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 320406-321872 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 321892-322905 bp Gene: cd09693:cas5 Type: Type-I Location: 322921-323718 bp Gene: cd09641:cas3HD Type: Type-I Location: 323745-326153 bp CRISPR array Location: 488644-489461 bp Num of repeats: 13 Spacers: s7-s18 CRISPR array Location: 488644-489461 bp Num of repeats: 13 Spacers: s7-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244590-245016 bp]: array | spacers
           [Locus range 488644-489461 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJWC010000003.1 Clostridioides difficile strain clo22 genome assembly, contig: ERS080188SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 486121 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190347-190971 bp 2 Locus 2: 394417-395106 bp Zoom in on locus 1 x10 Zoom in on locus 2 x11 CRISPR array Location: 190347-190971 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 190347-190971 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 394417-395106 bp Num of repeats: 11 Spacers: s10-s19 CRISPR array Location: 394417-395106 bp Num of repeats: 11 Spacers: s10-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190347-190971 bp]: array | spacers
           [Locus range 394417-395106 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJWC010000010.1 Clostridioides difficile strain clo22 genome assembly, contig: ERS080188SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 114738 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4430-5310 bp 2 Locus 2: 95097-96638 bp Zoom in on locus 1 x3 x9 Zoom in on locus 2 x24 CRISPR array Location: 4430-4589 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 4430-4589 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 4759-5310 bp Num of repeats: 9 Spacers: s3-s10 CRISPR array Location: 4759-5310 bp Num of repeats: 9 Spacers: s3-s10 CRISPR array Location: 95097-96638 bp Num of repeats: 24 Spacers: s11-s33 CRISPR array Location: 95097-96638 bp Num of repeats: 24 Spacers: s11-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4430-4589 bp]: array | spacers
           [Locus range 4759-5310 bp]: array | spacers
           [Locus range 95097-96638 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJWC010000004.1 Clostridioides difficile strain clo22 genome assembly, contig: ERS080188SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 436916 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4381-4476 bp 2 Locus 2: 320967-322048 bp Zoom in on locus 1 x2 Zoom in on locus 2 x17 CRISPR array Location: 4381-4476 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 4381-4476 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 320967-322048 bp Num of repeats: 17 Spacers: s2-s17 CRISPR array Location: 320967-322048 bp Num of repeats: 17 Spacers: s2-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4381-4476 bp]: array | spacers
           [Locus range 320967-322048 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJWC010000014.1 Clostridioides difficile strain clo22 genome assembly, contig: ERS080188SCcontig000014, whole genome shotgun sequence

⇒Summary: seq-len = 50638 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36415-37535 bp Zoom in on locus 1 x6 x3 CRISPR array Location: 36415-36775 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 36415-36775 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 37373-37535 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 37373-37535 bp Num of repeats: 3 Spacers: s6-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 36415-36775 bp]: array | spacers
           [Locus range 37373-37535 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)