CRISPRone

CRISPRone report for GCA_901004855.1_7614_7_29

♦ Seq 1: CAAJWI010000009.1 Clostridioides difficile strain clo31 genome assembly, contig: ERS080196SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 147254 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125741-137439 bp Zoom in on locus 1 x33 CRISPR array Location: 125741-127862 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 125741-127862 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 128046-128312 bp Gene: cd09722:cas1 Type: universal Location: 128315-129295 bp Gene: pfam01930:cas4 Type: Type-I Location: 129298-129816 bp Gene: COG1203:cas3 Type: Type-I Location: 129864-132185 bp Gene: cd09693:cas5 Type: Type-I Location: 132196-132897 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 132899-133813 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 133815-135665 bp Gene: pfam01881:cas6 Type: other Location: 135671-136408 bp Gene: pfam13280:WYL Type: other Location: 136486-137439 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 125741-127862 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJWI010000019.1 Clostridioides difficile strain clo31 genome assembly, contig: ERS080196SCcontig000019, whole genome shotgun sequence

⇒Summary: seq-len = 77859 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31217-32030 bp Zoom in on locus 1 x13 CRISPR array Location: 31217-32030 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 31217-32030 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 31217-32030 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJWI010000001.1 Clostridioides difficile strain clo31 genome assembly, contig: ERS080196SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 295248 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190587-191214 bp Zoom in on locus 1 x10 CRISPR array Location: 190587-191214 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 190587-191214 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190587-191214 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJWI010000002.1 Clostridioides difficile strain clo31 genome assembly, contig: ERS080196SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 258491 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97929-108882 bp 2 Locus 2: 161485-169812 bp Zoom in on locus 1 Zoom in on locus 2 Gene: cd06127:DEDDh Type: Type-I Location: 97929-98435 bp Gene: unk Type: unknown Location: 98594-99262 bp Gene: unk Type: unknown Location: 99675-100181 bp Gene: cd06127:DEDDh Type: Type-I Location: 100545-101582 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 108397-108882 bp Gene: cd09641:cas3HD Type: Type-I Location: 161485-163893 bp Gene: cd09693:cas5 Type: Type-I Location: 163920-164717 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 164733-165746 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 165765-167231 bp Gene: pfam01881:cas6 Type: other Location: 167236-167973 bp Gene: unk Type: unknown Location: 168074-168250 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 168703-169812 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJWI010000020.1 Clostridioides difficile strain clo31 genome assembly, contig: ERS080196SCcontig000020, whole genome shotgun sequence

⇒Summary: seq-len = 75978 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1584-2733 bp Zoom in on locus 1 x18 CRISPR array Location: 1584-2733 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 1584-2733 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1584-2733 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJWI010000011.1 Clostridioides difficile strain clo31 genome assembly, contig: ERS080196SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 140728 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 67402-78989 bp Zoom in on locus 1 x39 Gene: cd09652:cas6 Type: other Location: 67402-68097 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 68109-69848 bp Gene: pfam05107:cas7b Type: Type-I Location: 69841-70830 bp Gene: cd09693:cas5 Type: Type-I Location: 70832-71572 bp Gene: cd09641:cas3HD Type: Type-I Location: 71596-74154 bp CRISPR array Location: 74344-76877 bp Num of repeats: 39 Spacers: s1-s38 CRISPR array Location: 74344-76877 bp Num of repeats: 39 Spacers: s1-s38 Gene: pfam01930:cas4 Type: Type-I Location: 76961-77455 bp Gene: cd09722:cas1 Type: universal Location: 77481-78488 bp Gene: cd09725:cas2 Type: universal Location: 78699-78989 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 74344-76877 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJWI010000003.1 Clostridioides difficile strain clo31 genome assembly, contig: ERS080196SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 246027 bp; # of CRISPR array = 1; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6456-18767 bp Zoom in on locus 1 x44 Gene: COG0640:csa3 Type: Subtype-I-A Location: 6456-6833 bp Gene: cd09718:cas1 Type: universal Location: 6845-8500 bp CRISPR array Location: 15902-18767 bp Num of repeats: 44 Spacers: s1-s43 CRISPR array Location: 15902-18767 bp Num of repeats: 44 Spacers: s1-s43 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 15902-18767 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)